Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq198807 185 1e-41 seq5983 185 1e-41 >seq198807 Length=933 Score = 185 bits (204), Expect = 1e-41 Identities = 147/177 (83%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| |||||||| | ||||||||| || || | ||||||||| |||||||| Sbjct 679 CTTGAGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAA 738 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||||||||| || | ||| ||||||||||| || ||||| ||||| Sbjct 739 GGGCACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTC 798 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 | ||||| |||||||||||| ||||||||| ||||| |||||| | ||| ||| Sbjct 799 GCTTACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTC 855 >seq5983 Length=3405033 Score = 185 bits (204), Expect = 1e-41 Identities = 147/177 (83%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| |||||||| | ||||||||| || || | ||||||||| |||||||| Sbjct 1577680 CTTGAGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAA 1577621 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||||||||| || | ||| ||||||||||| || ||||| ||||| Sbjct 1577620 GGGCACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTC 1577561 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 | ||||| |||||||||||| ||||||||| ||||| |||||| | ||| ||| Sbjct 1577560 GCTTACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTC 1577504 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||| ||||||||||||||||||||||||||||| || ||||||||||| || | | Sbjct 1576437 GGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCCTCCCGCTC 1576378 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 | |||||| | || ||||| |||| |||| |||||||||||| ||| || Sbjct 1576377 CTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGTTGGCGTCCCAGATCTTCACGCC 1576318 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||| | || |||||||| || | |||||| ||| ||| Sbjct 1576317 CTTCTCAGACAGCTCCTTGGAATTCGTGGAACCCTGGA 1576280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580370518432800