Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5389 244 1e-59 seq742 104 2e-17 >seq5389 Length=131951 Score = 244 bits (270), Expect = 1e-59 Identities = 917/1424 (64%), Gaps = 22/1424 (2%) Strand=Plus/Plus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 ||| || |||| ||||||||| | ||||| || || ||||||||| || | ||| Sbjct 36592 TACCTGCTGAAGATCAACGGCAAGGTGGCGGAGCGGCCGCAGCACATGCTGATGAGGGTG 36651 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 ||||||||||| ||| ||||| ||||||||| |||| |||||| | || |||| Sbjct 36652 GCGGTGGGCATCCACAAGAGGGACATCGACGCCGCCGTGGAGACGTACAACCTGCTGTCG 36711 Query 7645 TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAA 7704 ||| ||| |||||||| |||||||| |||| ||| ||||| ||| || || Sbjct 36712 GAGAAGTGGTTCACGCACGCCTCGCCCACGCTGTTCAACGCCGGCACCAACCGACCGCAG 36771 Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764 | | || || |||| ||||| || ||||||||||| ||||| ||| ||||| Sbjct 36772 CTCAGCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACG 36831 Query 7765 CTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGA 7823 || | ||||| || ||||| | |||| ||||| || || || || | | Sbjct 36832 CTCAAGCAGTGCGCGCTCATCTCCAAGT-CGGCGGGCGGCATCGGCGTGGCGGTGAGCTG 36890 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | ||||||| || ||| ||||| ||||||||| || ||| ||| | | ||| Sbjct 36891 CATCCGCGCCACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTGGTGCC 36950 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 |||| ||||||||| ||| ||| ||| ||| | || |||||||| || |||||| Sbjct 36951 CATGCTGCGCGTGTACAACAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGCCC 37010 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| || ||||||| |||||||| ||| | | || | || | || Sbjct 37011 CGGGGCCTTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAGCT 37070 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| ||| || || |||| || ||||| || |||| ||| ||||| Sbjct 37071 GAAGAAGAACACGGGCAAGGAGGAGCAGC-GCGCCCGCGACCTGTTCTACGGCATGTGGA 37129 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | ||||| ||||| |||| | | || | | | || ||||||| || ||||||||| Sbjct 37130 TCCCCGACCTGTTCATGAAGAGGGTGGAGTCCAACCAGGAATGGTCCCTGATGTGCCCCA 37189 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| | | | | || | ||||| | |||||| | Sbjct 37190 ACGACTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTACACCGGCT 37249 Query 8180 ACGAACACGACGGCGCGTA----CGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCC 8235 |||| | ||||| | | | ||| ||||| || | | || | |||| Sbjct 37250 ACGA----GGCGGCGGGCAAGGCCAAGCGCGTGGTGAAGGCACAGCAGGTGTGGCACGCC 37305 Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 || ||||| | || | || || || | ||| |||||||| ||||| ||||| |||||| Sbjct 37306 ATCATCGAGTCGCAGACGGAGACGGGCACGCCCTACATGCTCTACAAGGACGCCTGCAAC 37365 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 ||| ||||| || ||| ||||| ||| | |||||| |||||| | || || Sbjct 37366 CGCAAGAGCAACCAGCAGAACCTGGGCTGCATCAAGTCCAGCAACCTGTGCACGGAGATC 37425 Query 8356 GTACAGTACAGC-GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAA 8414 | |||||| | ||| ||||| || ||||| ||||| || || || | | || Sbjct 37426 ATCGAGTACACCAGCG-GGGACGAGGTCGCCGTGTGCAACCTGGCCTCCATCGCGCTCAA 37484 Query 8415 CGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCA 8474 | || || ||| | || | ||| | |||||| | | || | || | | Sbjct 37485 CATGTACG-TGACGGCCGAGC--GCACCTTCGACTTCAAGAAGCTGGCCAGCGTCACCAA 37541 Query 8475 AGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC 8534 |||| || || | | ||||| || ||||| || || ||| | | || Sbjct 37542 GGTGATCGTGAAGAACCTCAACAAGATCATCGAGGTCAACTTCTA-CCCGGTGCCGGAGG 37600 Query 8535 GCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACG 8593 ||| | ||||||| ||| ||| | || | ||| | |||||||| || |||||||||| Sbjct 37601 GCGAGAGGTCGAACAAGCGGCACCGGCCTATCGGCATCGGCGTGCAGGGCCTGGCCGACG 37660 Query 8594 CGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAA 8653 | || | || ||||| ||||| ||| |||| || || | | ||||||| | | Sbjct 37661 CCTTCATCCTGATGCGCTACCCCTTCGAGAGCCCGGAGGCCCAGCTCCTCAACAGGCACA 37720 Query 8654 TAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGG 8713 | || || | || ||| || | || | ||||| | | || || ||| Sbjct 37721 TCTTCGAGACCATCTACCACGCGGCGCTGGAGTCGAGCTGCGAGCAGGCGGCGGAGCTGG 37780 Query 8714 GCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGT 8773 | ||||||| ||||| ||||| |||| | |||| || | |||| |||||||||| Sbjct 37781 GGCCGTACGAGACGTACCCGGGCTGCCCCGTCAGCAAGGGGGTGCTGCAGTACGACATGT 37840 Query 8774 GGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAAT 8833 || || || |||||| | ||| | |||| | || || || || | Sbjct 37841 GGGGCGTGACCCCCACCGACCTCTGGGACTGGAAGCTGCTCAAGGAGAAGATCGCCAAGC 37900 Query 8834 TCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAA 8893 ||| || | || ||| || |||| ||||||||||||| | || || || || Sbjct 37901 ACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCACAGATCC 37960 Query 8894 TGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 |||| |||||||| ||| | ||||| | ||||| |||| ||||| Sbjct 37961 TGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACCTGTAC 38004 >seq742 Length=2242023 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || || || || |||||||| || || |||||||||||| Sbjct 1678505 CCTCCCCTCAGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1678446 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | ||||||||| || || Sbjct 1678445 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGG 1678386 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | ||||| Sbjct 1678385 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1678326 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 1678325 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1678279 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || || || || |||||||| || || ||||||||||| Sbjct 1675285 CCACCCCTCAGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1675226 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | ||||||||| || || Sbjct 1675225 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 1675166 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || || | ||||| | ||||| Sbjct 1675165 ATGCCTTCCTTGTCCTGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACC 1675106 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||||| || || || ||||| Sbjct 1675105 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 1675059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502698138476040