Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq266300 776 0.0 seq300558 176 1e-39 >seq266300 Length=503 Score = 776 bits (860), Expect = 0.0 Identities = 430/430 (100%), Gaps = 0/430 (0%) Strand=Plus/Minus Query 29521 ATCGATTTTATGAATATACAAATAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 29580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 ATCGATTTTATGAATATACAAATAATTGGAGCCAACCTGCAGGTGATGATTATCAGCCAG 376 Query 29581 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTTTATTTTTGCT 29640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 CAGAGAATTAAGGAAAACAGACAGGTTTATTGAGCGCTTATCTTTCCCTTTATTTTTGCT 316 Query 29641 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 29700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 GCGGTAAGTCGCATAAAAACCATTCTTCATAATTCAATCCATTTACTATGTTATGTTCTG 256 Query 29701 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 29760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 AGGGGAGTGAAAATTCCCCTAATTCGATGAAGATTCTTGCTCAATTGTTATCAGCTATGC 196 Query 29761 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 29820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 GCCGACCAGAACACCTTGCCGATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAA 136 Query 29821 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 29880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CTTTCCCCACAACGGAACAACTCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTG 76 Query 29881 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 29940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 GTTGTAAAAACACCTGACCGCTATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCC 16 Query 29941 CAAGTCTGGC 29950 |||||||||| Sbjct 15 CAAGTCTGGC 6 >seq300558 Length=1001 Score = 176 bits (194), Expect = 1e-39 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 26318 CGTCGACGGCCTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 26377 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 CGTCGACGGCTTCACGAAACATCTTTTCATCGCCAATAAAAGTGGCGATAGTGAATTTAG 645 Query 26378 TCTGGATAGCCATAAGTGTTTGATCCATTTTTTGGGACTCCT 26419 ||||||||||||||||||||||||||||| |||||||||||| Sbjct 644 TCTGGATAGCCATAAGTGTTTGATCCATTCTTTGGGACTCCT 603 Score = 140 bits (154), Expect = 8e-29 Identities = 82/84 (98%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 29446 AACTGAAGCTTTAGAGCGATTTATCTTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAA 29505 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 AACT-AAGCTTTAGAGCGATTTATCTTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAA 449 Query 29506 GAGAAAAGTTTTTCCATCGATTTT 29529 ||||||||||||||||||||| || Sbjct 448 GAGAAAAGTTTTTCCATCGATGTT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122100294390674