Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq348077 91.5 1e-13 seq1508 89.7 4e-13 seq752 87.8 1e-12 >seq348077 Length=562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| |||||||||| || || ||||||||||| |||||| |||||||| | Sbjct 435 CCAGACGACCTCCAGCTGGGCGTTTAGGCGGTCCAGCTTCTCAAAGTCGTCCTTGTTGGT 494 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || |||| ||||| | ||||||||||||||| ||||||| |||| ||||| | | Sbjct 495 CACCTGA-CCTCCTGACTTCAGCCTCCAGCCGTTGGTCTTCCAGGTCTTCACCCAGGTGG 553 Query 77430 TCACACC 77436 ||||||| Sbjct 554 TCACACC 560 >seq1508 Length=1569309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || ||| ||||||| ||||||| || |||||||||||||| || || || ||||| Sbjct 108195 GGGGAGCGAATTGTCGCTTTTGCAGCAGTTGAAGGCATTTTCTTCTCGGGTTCCTTTGCT 108254 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| || ||| ||||||| |||| |||||||||| || | || |||||| | Sbjct 108255 TCCATCTTCTGGCTAAAGAAGAGAGGGCTGATGCCTGGCCTGGCCCACTCCAATGAGCTG 108314 Query 44243 ATAAGTCGTGATGA 44256 || ||| | || || Sbjct 108315 ATTAGTAGAGACGA 108328 >seq752 Length=123329 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77431 CACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTC 77490 || ||| |||||||||||| ||||||| ||||||| ||||||||||||||| | | ||| Sbjct 97084 CATACCGTTGATGGTGAACTTGCTGTCGGTGTAGATGACCAGCTTCTTGATGTCCTGCTC 97025 Query 77491 CTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTG 77523 || || |||| ||| ||| || | || ||||| Sbjct 97024 CTTGGCCTGTTCCAGGGCTCTGCAGGCCGCCTG 96992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395385545749135