Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5389 109 2e-18 seq3661 95.1 4e-14 >seq5389 Length=131951 Score = 109 bits (120), Expect = 2e-18 Identities = 200/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || |||| ||||||| ||| |||||||| || || || ||| ||| ||| Sbjct 36949 CCCATGCTGCGCGTGTACAACAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGC 37008 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || || ||| |||| ||||||||||| |||||||||||| | ||| | | Sbjct 37009 CCCGGGGCCTTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAG 37068 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 ||| | || || |||| ||||||| | |||||||||| | | | || | ||| Sbjct 37069 CTGAAGAAGAACACGGGCAAGGAGGAGCAGCGCGCCCGCGACCTGTTCTACGGCATGTGG 37128 Query 255161 TGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCC 255220 | ||| ||||| ||| | ||||| || || ||| ||| ||||| ||| Sbjct 37129 ATCCCCGACCTGTTCATGAAGAGGGTGGAGTCCAACCAGGAATGGTCCCTGATGTGCCCC 37188 Query 255221 AACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTA 255273 ||| | ||||| || | ||| | ||||| || |||||||| || ||||| Sbjct 37189 AACGACTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTA 37241 >seq3661 Length=2364936 Score = 95.1 bits (104), Expect = 4e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 |||||| | |||||||| |||| || |||||| | || || ||| ||| ||||| Sbjct 460735 GAGCGAGTGGTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTT-GCCTC 460677 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 |||||||||| |||| ||| | || || |||| |||||||||||| || ||||| || Sbjct 460676 CATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGAACTCAT 460617 Query 443826 CAGTCGGGACGAGG 443839 ||| ||||||||| Sbjct 460616 CAGCAGGGACGAGG 460603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1579637623328015