Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5389 136 5e-27 seq3564 102 1e-16 >seq5389 Length=131951 Score = 136 bits (150), Expect = 5e-27 Identities = 945/1500 (63%), Gaps = 60/1500 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | ||||||| || | | ||| ||||| Sbjct 38097 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTGAGGTCCTTCAGCATGTGGGGGTTGAT 38038 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | ||| || | ||| | ||| | ||||| || || | Sbjct 38037 GATCTGGAACTCTCCCGAGAGCACCCTGCGGGTGTACAGGTTGCTGGTGTAGGGCTCGAT 37978 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| ||||| |||||||| || ||||| || |||| || || Sbjct 37977 GGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAG 37918 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | || ||| |||||||| | | |||||| || | Sbjct 37917 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGCAGCTTCCAGTCCCAGAGGTC 37858 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG--GACGCGGGAGAACC 110910 | | || |||| |||||||||| |||| |||||||| | | |||| || || || Sbjct 37857 GGTGGGGGTCACGC-CCCACATGTCGTACTGCAGCACCCCCTTGCTGACGGGGCAG--CC 37801 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 | | || || || | || | | | ||| || ||||||| |||||| | || Sbjct 37800 CGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCTGCTCGCAGCTCGACTCCAGCGCCGC 37741 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | || ||| || || || | Sbjct 37740 GTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGG 37681 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 |||||| || || || | || || || || || || || | || ||||| | ||| Sbjct 37680 GTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTG 37621 Query 111091 TCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 ||| | || ||| | |||| | || |||| || || || || |||| || Sbjct 37620 CCGCTTGTTCGACCTCTCGCCCTCCGGCACCGGG-TAGAAGTTGACCTCGATGATCTTGT 37562 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | || || || | | ||| |||| || || | | || || ||||| Sbjct 37561 TGAGGTTCTTCACGATCACCTTGGTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCG-- 37504 Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 ||| | | || ||| | || ||||| || |||| ||||| || || ||| | Sbjct 37503 -CTCGGCCGTCACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGT 37445 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 || |||||||| | || || || || | |||| ||| || |||| | Sbjct 37444 CCCCGCTGGTGTACTCGATGATCTCCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGT 37385 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| ||||| ||||| |||||| || ||||||||||||||||||||||| ||||||| Sbjct 37384 TCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCT 37325 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCC 111448 ||||||| || | || || || | ||| || | | | | || || | | |||||| Sbjct 37324 CCGTCTGCGACTCGATGATGGCGTGCCACACCTGCTGTGCCT-TCACCACGCGCTTGGCC 37266 Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGA 111507 ||| |||||||||| ||||| || ||||||||||| ||| | || ||| Sbjct 37265 TTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTCTCAAACTCCTC-CCCCCAGCACTCGTC 37207 Query 111508 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGC 111565 || || || | || || || | || ||||||| || || ||| |||| | Sbjct 37206 CAGCCCGGGGCAGTCGTTGGGGCACATCAGGGACCATT--CCTGGTTGGACTCCACCCTC 37149 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625 |||||||| ||||| || ||||||| | | || || || | || ||| || Sbjct 37148 TTCATGAACAGGTCGGGGATCCACATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCC 37089 Query 111626 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | || ||| || | | ||| |||||||| | || || |||||||| ||||| || Sbjct 37088 TTGCCCGTGTT-CTTCTTCAGCTCCAGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAG 37030 Query 111685 ATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 || | |||| | || ||| | | ||||| || | || |||||||| | Sbjct 37029 GTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCCC----TGGTCCACGTAGCGCGCCG 36974 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| | ||||| ||||| || | | || | || | || || || || Sbjct 36973 TGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGAGTTGCCGTTGGTGCC----- 36919 Query 111798 TACGAGATTTATTGGCTCTCACAT--CATGGATG---------TGCATCCCAATACCCCC 111846 | ||| || |||| | | | | ||||| || || || || || Sbjct 36918 --GGCGATGTA---GCTC-CCCGTGGCGCGGATGCAGCTCACCGCCACGCCGATGCCGCC 36865 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||| |||| ||||| |||| |||| | | || || | ||||| || | ||| ||| Sbjct 36864 CGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTC 36805 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTG 111964 ||||| |||| | |||||||| ||| | |||||||| |||||| || || ||| Sbjct 36804 GTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTG--CCGGCGTTG 36747 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 || || || || | ||||| ||||| || | | |||| | || ||| ||||||| Sbjct 36746 AACAGCGTGGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCAGGTTGTACGTCTCCAC 36688 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | | || ||||| | ||||||||| | || |||| ||| | ||||| ||| || Sbjct 36687 GGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATCAGCATGTGCTGCGG 36628 >seq3564 Length=3914096 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| ||||| |||||||| | || || || || | |||| | ||| || || || Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCC 3070048 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 |||||||||||| || | || || || | ||| || Sbjct 3070047 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACAC 3070012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624676527079200