Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5389 141 1e-28 seq3564 105 8e-18 seq3661 102 1e-16 seq300154 93.3 5e-14 seq300152 93.3 5e-14 >seq5389 Length=131951 Score = 141 bits (156), Expect = 1e-28 Identities = 877/1387 (63%), Gaps = 48/1387 (3%) Strand=Plus/Minus Query 118188 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 118247 ||| | ||||| ||||| | | |||| ||||| |||| ||| || || |||||||| ||| Sbjct 37997 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAGGCGGTG 37938 Query 118248 GGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG- 118306 |||||||| |||| || |||||||| | | || | | || |||||||| Sbjct 37937 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTGAGC 37878 Query 118307 AGC-----GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 ||| ||||||| || | || | ||| | ||| ||||| || |||| || Sbjct 37877 AGCTTCCAGTCCCAGAGGTCGGTGGGG---GTCACGCCC---CACATGTCGTACTGCAGC 37824 Query 118362 ATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419 | || | | |||| ||| | ||| | ||||| || || ||| || ||||| Sbjct 37823 ACCCCCTTGCTGACGG-GGC-AGCCCGGGTACGTCTCGTACGGCCCCAGCTCCGCCGCCT 37766 Query 118420 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 ||| |||||| ||| || || ||||| || || || || || ||| | || | Sbjct 37765 GCTCGCAGCTCGACTCCAGCGCCGCGTGGTAGATGGTCTCGAAGATGTGCCTGTTGAGGA 37706 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539 || |||||| | || || | | || || || || | || || || || | Sbjct 37705 GCTGGGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGGCCCT 37646 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGG 118596 | || |||| ||| || || || || | | | || ||| || || |||| || | Sbjct 37645 GCACGCCGATGCCGATAGGCCGGTGCCGCTTGTTCGACCTCT---CGCCCTCCGGCACCG 37589 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || || || ||||| | | | || || || || || ||||| |||| Sbjct 37588 GGTAGAAGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTGGTGACGCTGG 37529 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 ||||| | | | || || |||| ||| | | || ||| | || ||||| | Sbjct 37528 CCAGCTTCTTGAAGTCGAAGGTGCG---CTCGGCCGTCACGTACATGTTGAGCGCGATGG 37472 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | ||||| || ||||| | | ||| ||| |||||||| || || |||||||||| Sbjct 37471 AGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCACA 37412 Query 118777 AGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 ||| || ||| | ||| ||||| ||||| || || ||| ||| || || || Sbjct 37411 GGTTGCTGGACT--TGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTC 37354 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 |||||| |||||||| ||||| ||||||||||| || |||| || || || | ||| || Sbjct 37353 CTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACAC 37294 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 | || ||| | ||||| ||| | ||||||| ||||| || Sbjct 37293 CTGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTT 37234 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| || ||| | ||| ||||| || | | ||||| | || || Sbjct 37233 CTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGA 37174 Query 119015 CCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-A 119071 ||||| || | ||| |||| ||||||||| ||||| |||||||| | |||| | Sbjct 37173 CCATT--CCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-TGCCGTA 37117 Query 119072 GAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 ||| || || || ||| ||| || | | ||| || || || ||||| || | Sbjct 37116 GAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAGGAACT 37058 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGAC 119184 | | || || |||||||| || |||||||||| |||| | ||| ||| | Sbjct 37057 CGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTT--GTT 37000 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| || || | ||| ||| ||| | || || ||||| || | | | Sbjct 36999 G-CCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGC 36941 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | | ||| | ||| || || || || | |||| | || | | Sbjct 36940 CGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGATGCAGCTCACCG 36881 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 || || || || || ||| |||| ||||| ||||||||| | |||| || |||||| Sbjct 36880 CCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGA 36821 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||| ||| |||| | || | ||||||||||| | || || | | Sbjct 36820 TGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGT 36761 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTG 119483 || || |||||||| || || || | ||||| ||||| || | | |||| | | Sbjct 36760 TGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAAC-CACTTCTCCGACAGCAGG 36702 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 | ||| ||||||| | ||||| ||||| | ||| || || | || |||| ||| Sbjct 36701 TTGTACGTCTCCACGGCGGCGTCGATGTCCCTCTTGTGGATGCCCACCGCCACCCTCATC 36642 Query 119544 AACATGT 119550 | ||||| Sbjct 36641 AGCATGT 36635 >seq3564 Length=3914096 Score = 105 bits (116), Expect = 8e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 ||| ||||| |||||||| | || |||||||||| ||| | ||| |||||||| Sbjct 3070167 CTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 3070108 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| |||| || || |||||||| || ||||||||||| || Sbjct 3070107 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCC 3070048 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||||||| ||||||| || || || | ||| || Sbjct 3070047 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACAC 3070012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | |||| |||||||||| ||| ||||| |||||| Sbjct 3071812 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAG 3071753 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || ||||||||||| |||| || || ||||| Sbjct 3071752 GCGGTGGGCATGGGAGCCAGCAGCAGACTGTT 3071721 >seq3661 Length=2364936 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||||||||| |||||| |||||| ||||| || |||| ||||| Sbjct 460603 CCTCGTCCCTGCTGATGAGTTCATTGGAGAAGGTCAGACCGGGCATTAGCCCCCTCTTCT 460662 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | ||| ||||||||||| ||||| || |||||| ||||| | Sbjct 460663 TCAGCCAGAAGATGGAGGCAAACGAGCCAGAGAAAAAGATTCCTTCCACAGCAGCGAAAG 460722 Query 130155 CAAAGAGACGCTCA 130168 | | | |||||| Sbjct 460723 CGACCACTCGCTCA 460736 >seq300154 Length=373 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||| ||||| ||||| |||||| ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | || ||||||||||||||||| || |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 130155 CAAAGAGACGCTCA 130168 ||| | |||||| Sbjct 95 CAACCACTCGCTCA 82 >seq300152 Length=362 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||| ||||| ||||| |||||| ||||| || |||| ||||| Sbjct 215 CCTCATCCCTGCTGATGAGCTCATTGGAGAAAGTCAGACCGGGCATTAGCCCCCTCTTCT 156 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | || ||||||||||||||||| || |||||| ||||| | Sbjct 155 TCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATTCCTTCCACAGCAGCGAAAG 96 Query 130155 CAAAGAGACGCTCA 130168 ||| | |||||| Sbjct 95 CAACCACTCGCTCA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615131001222120