Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5353 172 2e-37 seq742 143 8e-29 seq6072 89.7 2e-12 seq6135 84.2 7e-11 >seq5353 Length=2895058 Score = 172 bits (190), Expect = 2e-37 Identities = 606/943 (64%), Gaps = 5/943 (1%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 ||||| || ||||| || || || || || ||||| | ||| | || ||| || Sbjct 2261972 ATAGGCATTGATTTGGGCACCACCTACTCCTGTGTGGGTGTATTCCAGCATGGCAAAGTG 2261913 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || |||||||| || || ||| | || || || || || || || | ||| Sbjct 2261912 GAGATTATCGCAAATGACCAGGGAAACCGCACCACACCGAGCTATGTGGCTTTCAACGAT 2261853 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 | ||| | | ||||| ||| |||| ||||| || | || || || || || Sbjct 2261852 TCAGAGAGGCTCATTGGAGATGCTGCGAAAAACCAGGTGGCCATGAACCCTTCCAACACA 2261793 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 | || ||||| ||||| | |||||||||| ||| |||| || | || |||| Sbjct 2261792 ATCTTCGATGCCAAGCGCTTAATTGGTAGAAAGTTTGATGACCAAATTGTGCAGGCTGAC 2261733 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || | | ||||| | || | | |||| || || | | | || Sbjct 2261732 ATGAAGCTGTGGCCTTTCAAGGTCATCAGCGATAACGGA---AAGCCCAAAGTCCAAGTG 2261676 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 || || || || || || | || || || ||||| || || || |||||| | || Sbjct 2261675 GAGTACAAGGGGGAGACCAAGGATTTCTTCCCAGAAGAGATCTCCTCTATGGTTCTGGTC 2261616 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| || ||||| || || || || || || || |||| || || || Sbjct 2261615 AAAATGAAGGAGATAGCTGAGGCCTACTTGGGGCAACGGGTGTCTAATGCAGTCATCACC 2261556 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || |||||||| ||||| | || || || ||||| || ||| | Sbjct 2261555 GTCCCAGCTTACTTTAATGACTCCCAGAGGCAAGCTACCAAGGATGCCGGGGTTATTTCA 2261496 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| ||| | || || ||||| || || || || || || || ||||| ||| Sbjct 2261495 GGCCTGAATGTGCTACGGATCATCAATGAGCCGACAGCAGCGGCTATCGCCTATGGTCTT 2261436 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || ||| | | |||| | |||| | || || ||||| | ||||| ||||| || Sbjct 2261435 GACAAAGCCAAAAAAGAAGAGAGAAATGTCCTAATCTTTGACCTGGGTGGAGGTACCTTC 2261376 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || | || || |||| || || || || || || || | || || || || Sbjct 2261375 GACGTGTCCGTCCTCACCATTGAGGATGGCATCTTCGAGGTAAAGTCCACCGCAGGAGAC 2261316 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || ||||| || || || || ||||| || || | || || ||||| ||||||| Sbjct 2261315 ACGCATCTGGGCGGGGAGGACTTTGACAACCGCATGGTGCAACACTTTGTCGAAGAATTC 2261256 Query 349922 AAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 ||| | || || | || || | | ||| |||||| || | || || | ||| Sbjct 2261255 AAGAGAAAACACAAGAAGGACATCAGCCAAAATAAGAGAGCAGTGAGACGGCTTCGTACT 2261196 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || |||||| | || ||| | |||| || |||| | || | || ||||| || Sbjct 2261195 GCATGTGAAAGAGCCAAGAGAACCTTGTCCTCTAGCTCGCAGGCAAGCATCGAAATCGAC 2261136 Query 350042 TCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA-ATT 350100 ||||| ||| |||| || || | | || |||||| | || || || || || | Sbjct 2261135 TCTCTCTTTGAAGGCATTGACTTTTACACCTCCATTACAAGGGCCCGCTTCGAGGAGCTC 2261076 Query 350101 ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAA 350143 | | | || || || || | ||| ||||||| ||||| ||| Sbjct 2261075 AACTCT-GAGCTCTTCAGGGGAACGCTGGATCCGGTGGAGAAA 2261034 >seq742 Length=2242023 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || ||||| || || || || ||||| | || ||||||||| Sbjct 1675270 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1675211 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || | |||||||| || ||||| ||||| || ||| Sbjct 1675210 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 1675151 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || |||||||| ||||| || || | ||| || || || ||||| || | ||| Sbjct 1675150 TGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 1675091 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| |||||||| Sbjct 1675090 TTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 1675059 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||||||||| || || ||||| || || || || || || | || ||||||||| Sbjct 1678490 AGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1678431 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || | |||||||| || || || ||||| || ||| Sbjct 1678430 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 1678371 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | || || || || || || || | ||| Sbjct 1678370 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTC 1678311 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 1678310 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1678279 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || ||||| || || || || ||||| | || ||||||||| Sbjct 1667601 AGGACAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1667542 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || | |||||||| || || || ||||| || ||| Sbjct 1667541 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 1667482 Query 140646 TGAATTTTAGCTTTTACATTATCAAT 140671 || || || || || || || || || Sbjct 1667481 TGGATCTTGGCCTTCACGTTCTCGAT 1667456 >seq6072 Length=1613416 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | || ||||| || || || ||||| | |||||| ||||| ||||| | Sbjct 409733 ATGCCGTCGTCACAGTACCCGCGTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGACG 409674 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | ||| | || ||||| || || |||| |||||||| |||||||| || || | Sbjct 409673 CCGGAACCATCTCTGGTTTAAACGTACTGCGAATCATTAATGAGCCCACTGCAGCTGCTA 409614 Query 349728 TTGCATATGGGCTTGATAA 349746 |||||||||| || || || Sbjct 409613 TTGCATATGGTCTGGACAA 409595 >seq6135 Length=2607864 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || ||||| || | || |||||||| || || || || ||||| |||| Sbjct 2128218 CTTTCTGGATGTTGTAATCCGAGAGGGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAGA 2128277 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| ||||||||||||||||||||| Sbjct 2128278 TCAGACGCTGCTGATCAGGAGGAATTCCT 2128306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506956248018881