Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028103.1 Length=32939 Score E Sequences producing significant alignments: (Bits) Value seq272266 226 6e-55 seq213072 176 9e-40 seq256110 122 2e-23 >seq272266 Length=497 Score = 226 bits (250), Expect = 6e-55 Identities = 343/479 (72%), Gaps = 13/479 (3%) Strand=Plus/Plus Query 6366 CGTTCATTTGTCCAGCAGAGGCGcccccccTTTCGTGAGCAAAAAGGGGGCAGGATGTCT 6425 || || || |||||||||||||| || ||||| || ||||| || || || ||| |||| Sbjct 19 CGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGTAGGGGGTCT 78 Query 6426 AGCAAGTTTTCGTCgggggggTCCGCGTCTATTGTAAAAATGCCGGGCAAAAGCAAGCG- 6484 ||| | ||||| |||||||| ||||| | ||||| | ||||||| ||| ||| Sbjct 79 AGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA---GCAGGCGC 135 Query 6485 --GTCAAAGTAGGATATTTTGGAAGA--GCT-GTTTAGAGCGTCCTGCCAGTTTTTGGCC 6539 ||| |||||| ||| ||| | || || ||| || | |||||| ||| Sbjct 136 GCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCG 195 Query 6540 GCTAGGGCTCTTTCGAACGGGTTAAGGGGAGGACCCCAAGGCATGGGATGAGTAAGAGCA 6599 || || || | ||| | ||||| || || |||||||| |||||||| || || || || Sbjct 196 GCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCGCG 255 Query 6600 GATGCGTACATTCCACAGATGTCATACACATACAGGGGTTCGGTGAGTACTCCGAGATAG 6659 || |||||||| || || ||||| || || | ||||| || |||||| ||| ||||| Sbjct 256 GAGGCGTACATGCCGCAAATGTCGTAAACGTG-AGGGGCTCTCTGAGTATTCCAAGATAT 314 Query 6660 GTGGGATAGCATCTTCCTCCCCGGATGCTGCTTCGCACGTAATCGTACAGTTCGTGGGAG 6719 || || ||||||||||| || ||||||||| |||||||||||||| |||||||| ||| Sbjct 315 GTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTATAGTTCGTGCGAG 374 Query 6720 GGAGCAAGGAAGTTAGGCCCCAAGTTTGTTTTCTGTGGTC-GCTGGGCGGTGTAGAGAAT 6778 ||||| ||| || | || || || ||| | | || | ||| || | || || Sbjct 375 GGAGCGAGG-AGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCTCGGAAG-CTAT 432 Query 6779 TTGGCGAAATATTGCGTGAGAATTAGAAGAGATGGTGGGACGTTGGAAGACATTGAAGC 6837 || | || || || || || || || || ||||| ||||| |||||||| ||||||| Sbjct 433 CTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAAGACGTTGAAGC 491 >seq213072 Length=511 Score = 176 bits (194), Expect = 9e-40 Identities = 248/343 (72%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 6004 CTTCCGCGCTGAGGTTGTCAGTTTCTATAAAAGAGGAGGATTTGATATTAATGTGCCCAC 6063 |||| ||||| || ||||||||||| | ||| ||||||||||||||||| | || || Sbjct 172 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 231 Query 6064 TTGCTATCCCTTTTAAGGTTTTATCGTCAAGTTGGTCAGAAAAAACAGtttttttATTGT 6123 | || ||||| | ||| | || | ||||||||||| || | ||||| | || Sbjct 232 CGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GT 289 Query 6124 CCAGTTTGGTAGCGAAGGAGCCGTATAGGGCGTTGGAAAGCAGTTTTGCAATGGATCTCA 6183 | || ||||| || || || ||||| ||||||||||| |||| || || ||||| | || Sbjct 290 CAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCA 349 Query 6184 GCGTTTGATTTTTGTCTTTGTCGGCTTTTTCTTTGGCGGCGATGTTGAGCTGCACATATT 6243 | ||||| |||||| | ||||| || ||||| |||||||| |||||||| |||| Sbjct 350 GGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 408 Query 6244 CCCTGGCTACGCATTTCCACTGAGGAAAAACGGTAGTGCGTTCATCTGGAATCAACCGCA 6303 | | || ||||| ||| | || || ||||| ||||| || || || | || ||| Sbjct 409 CGCGCGCAACGCACCGCCA-TTCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCA 467 Query 6304 CTTTCCAGCCTCGGTTGTGCAAGGTGACCATGTCGATACTGGT 6346 | ||| || |||||||||| |||||| | ||| | ||||| Sbjct 468 CGCGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGT 510 >seq256110 Length=496 Score = 122 bits (134), Expect = 2e-23 Identities = 249/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 10618 CTGGACATAGAAGAGGGCGAGGGCTTGGCGAGACTGGGCGCGCACTCGCCTGAGAGGCAC 10677 |||||| | || |||||||||||| ||||| | || || |||| ||| |||||| ||||| Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 10678 CCTCGTGTTCAGCTGAAAAAGGATTCCAGTGAAGCTTATATTCCACCCCGTAACTTATTT 10737 || | || |||||||| ||| | |||| || || | || | | ||| | ||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 10738 AGAGAACGAAGCGGGGAGGAGGCGGAAGAAATGAGGGACTCGCGGTTTAGA-GCGGGTAG 10796 | || || || |||||| | || || ||| |||| ||| || | || || | Sbjct 247 CGCGACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGA-TCGAAAGTTCCACGCAGGGCG 189 Query 10797 AGAGTTaaaaaaaGGGTTGGACAGGGAGCGCCTTTTGCGACCGGAGGATTTTGAAGCCCG 10856 ||| | | || || | | ||||| | |||| |||||| ||||| ||||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGA-GCCCG 130 Query 10857 AGACA-GAACGGGCGTCAGCGCTGCCAGGGCACACGTGGCTGCGGCCGACTTAGTGACGG 10915 | | |||| || | || | || | ||||||||||| || |||||| | || || | Sbjct 129 ACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCG 70 Query 10916 CTTACGAACAAACCGTGAAAGAAGAAATGAACTTTCAAAAAAGCTTTAATAACCACGTGC 10975 | ||||| || || ||||| | || || ||||| |||||||||||| |||||||||| Sbjct 69 CATACGAGCAGACGGTGAACCAGGAGATTAACTT--CAAAAAGCTTTAACAACCACGTGC 12 Query 10976 GAAC 10979 | || Sbjct 11 GTAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104748814522374