Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq272266 376 6e-100 seq213072 342 1e-89 seq256110 280 3e-71 seq295602 138 3e-28 >seq272266 Length=497 Score = 376 bits (416), Expect = 6e-100 Identities = 384/493 (78%), Gaps = 10/493 (2%) Strand=Plus/Plus Query 6272 ACCTCTCCGCGCAGACGTTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAG 6331 ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6332 GGGGGAAGCACGTCGAGGCGGTTCTCGTCTGGGGGGTCGGCGTCGATGGTAAAGATGCCT 6391 || || || ||| || | ||||||| |||||||| ||||| | |||||||| || Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6392 GGCAGCAGGCGCCGATCAAAGTAGTCGA-CGGGCGTGC--GCATGTCGTCCAGGGCCAGT 6448 |||||||||||| || |||||||| | | || | | ||| ||| || ||| | Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCA---AGTCTAGCGCCTGC 180 Query 6449 TGCCAGTCTCGGGCGGCCAGCGCGCGCTCGTAGGGATTGAGCGGCGGTCCCCAGGGCATG 6508 ||||| | |||||||| |||||||||||||| || ||||| || || ||||| |||||| Sbjct 181 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATG 240 Query 6509 GGATGGGTAAGGGCCGAGGCATACATGCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCC 6568 || ||||| || || ||||| ||||||||||| |||||||| |||| ||||||||| Sbjct 241 GGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTG 299 Query 6569 AGCACGCCGATGTAAGTGGGGTAGCAGCGGCCGCCGCGGATGCTGGCGCGTACGTAATCG 6628 || | || | || || |||||||| | || ||||||||||||||||| ||||||||| Sbjct 300 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCG 359 Query 6629 TACATCTCGTGCGAGGGGGCCAGCATGTCGGGTCCCAGGTTGGTGCGCCGCGGTC-GTTC 6687 || | ||||||||||| || || | |||||| || |||||| | || |||| | | || Sbjct 360 TATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACG-GGCGGGCTGCTC 418 Query 6688 CGCCCGGTACAGGATCTGTCTGAAGATGGCGTGGGAGTTGGACGAGATGGTGGGCCTCTG 6747 || ||| | ||||| ||||||||||| || |||||||| || ||||| || | ||| Sbjct 419 TGCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6748 GAAAACGTTAAAG 6760 ||| ||||| ||| Sbjct 478 GAAGACGTTGAAG 490 >seq213072 Length=511 Score = 342 bits (378), Expect = 1e-89 Identities = 284/342 (83%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5927 TCGGCACTCAGTGTGTCAGTTTCTACAAACGAGGAGGATTTGATGTAAACCTGCCCCGAG 5986 || || || || |||||||||| | |||||||||||||||||| | ||||| |||| | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5987 GCGATGCTTTTGAGGAGGGCGGGGTCCATCTGGTCGGCAAAAACGATTTTCTTGTTGTCG 6046 | ||||| ||||||| ||| | ||||||||||| | |||| | || || |||| ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAG-AAAAGCAATCTTTTTGT-GTCA 291 Query 6047 AGCTTGGTGGCGAACGACCCGTAGAGGGCGTTGGAGAGCAGTTTGGCGATGGAGCGCAGG 6106 ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6107 GTCTGGTTCTTGTCGCGGTCGGCCTTTTCCTTGGCGGCGATGTTGAGCTGCACGTACTCG 6166 || ||||| ||| |||| ||||| |||||||| |||||||| ||||||||||| ||| Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6167 CGCGCCAGACAGCGCCAGGCTGGAAAGACGGTTGTGCGTTCGTCGGGCAGCAGGCGCACG 6226 ||||| | || ||||| | || |||||||| ||||| |||||||||| |||| ||||| Sbjct 411 CGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6227 CGCCAGCCGCGGTTGTGCAGGGTGGCCAGGTCCACGCTGGTG 6268 ||||| |||||||||||||||||| | ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 280 bits (310), Expect = 3e-71 Identities = 298/387 (77%), Gaps = 6/387 (2%) Strand=Plus/Minus Query 10640 GGCGCCGCGGGCCCCGCCGAGCTGGAGCTGGAGGAGGGCGAAGGCTTGGCGCGGCTGGGC 10699 ||||||| ||||| || | ||||| ||||||||||||| ||| |||||||||| || Sbjct 386 GGCGCCG--GGCCCGGCACACCTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGA 329 Query 10700 GCCGGAGTGCCGGAGCGCCACCCGCGGGTGCAACTGGCTCGCGACCAGCGCCAGGCCTAC 10759 || || ||||| ||||| ||||||| ||| || || ||| |||| ||| Sbjct 328 GCGCCCTCTCCTGAGCGGCACCCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTAC 269 Query 10760 GTGCCGCCGCAGAACCTGTTTAGGGACCG-GAGCGGGGAGGAGGCGGAGGAAATGCGTGA 10818 ||||||| ||||||||||||| | ||||| ||| || |||||| | ||||| ||||| || Sbjct 268 GTGCCGCGGCAGAACCTGTTTCGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCGGGA 210 Query 10819 CTGCCGTTTTCGGGCCGGGCGGGAGCTGCGGGCGGGCTTGGAGCGCGAGCGGCTGCTGCG 10878 | || | || ||||| ||||||||| ||| || | ||||||||| ||||||| Sbjct 209 TCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCG 150 Query 10879 GCCCGAGGACTTTGAGCCCGAGGAGCGCAACGGTATCAGTCCGGCGCGCGCGCACGTCTC 10938 ||||||||||||||||| | ||| | ||| || ||||| |||||||| ||||| | Sbjct 149 CGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGC 90 Query 10939 GGCCGCCAACCTGGTGACGGCCTACGAGCAGACGGTGAACGAGGAGCGCAACTTTCAAAA 10998 ||||||| ||||||| || || |||||||||||||||||| ||||| ||| ||||||| Sbjct 89 GGCCGCCGACCTGGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAAC-TTCAAAA 31 Query 10999 GAGCTTCAACAACCACGTGCGCACCCT 11025 ||||| |||||||||||||| || || Sbjct 30 -AGCTTTAACAACCACGTGCGTACGCT 5 >seq295602 Length=499 Score = 138 bits (152), Expect = 3e-28 Identities = 143/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 14500 AGGACGCCAAGGACCGCAGTTACAACTTGCTTCCCGACGACAAAACCTCCACGGCCTACC 14559 ||||| |||| | |||||||||||| | | | | |||| |||| ||| |||| Sbjct 315 AGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGCACCTTCACCCAGTACC 374 Query 14560 GTAGCTGGTACCTGGCCTACAACTACGGCGATCCCCTGAAGGGCGTCCGCTCGTGGACGC 14619 | ||||||||||| || |||||||||||||| || | || || ||||||| ||||| | Sbjct 375 GCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGAATCCGCTCATGGACCC 434 Query 14620 TGCTGACCACGCCCGACGTGACCTGCGGCTCCGAGCAGGTGTACTGGTCGCTGCCGGACC 14679 |||| ||| || ||||| ||||||||||| |||||||| ||||||||| |||| | | Sbjct 435 TGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTACTGGTCGTTGCCAG-CA 493 Query 14680 TGATGC 14685 |||||| Sbjct 494 TGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111816756780654