Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq213072 300 3e-77 seq256110 251 2e-62 seq272266 178 3e-40 seq295602 120 7e-23 >seq213072 Length=511 Score = 300 bits (332), Expect = 3e-77 Identities = 275/342 (80%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5630 TCGGCGCTCAAGGTGTCAGTTTCTACAAACGAGGTGGATTTGATATTCACGCGGCCGGAG 5689 || ||||| | |||||||||| | |||||||| ||||||||||||||| |||| | | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 5690 GCAATGTCCTTGACGGTGGAGGTTTCCATTTGGTCAGAAAAAACAATCTTTTTATTGTCA 5749 | ||| | |||| ||||| | ||||| ||||||||||| |||||||||| | |||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCA 291 Query 5750 AGTTTCGTGGCAAACGACCCGTAGAGGGCGTTAGATAGCAATTTGGCAATGGAACGTAAA 5809 || || |||||||||||||||||||||||||| || ||||| ||||| ||||| || | Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 5810 GTTTGAtttttttCGCGGTCGGCCCGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCC 5869 ||||| ||||| |||| ||||| |||||||||||||||||||| || || ||||| || Sbjct 352 GTTTG-GTTTTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 5870 CGGGCCACGCAGCGCCACTCCGGGAAAACAGTAGTGCGCTCGTCGGGCACTATACGGACG 5929 || || ||||| ||||| | |||||| || || ||||||||||||||||| | | ||| Sbjct 411 CGCGCAACGCACCGCCA-TTCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 5930 CTCCAGCCCCTGTTGTGCAGGGTAATAAGGTCCACACTGGTG 5971 | ||| || | |||||||||||| | |||||| || |||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq256110 Length=496 Score = 251 bits (278), Expect = 2e-62 Identities = 268/353 (76%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 10304 GACTTGGAGGAGGGGGAAGGCTTGGCTCGCTTGGGAGCGCCCTCTCCGGAACGCCATCCC 10363 |||||||||||||| || ||| |||| || | |||||||||||||| || || || || Sbjct 364 GACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCACCCA 305 Query 10364 CGCGTGCAACTGGCCAGGGACGCCCGCCAGGCCTACGTTCCGCGGCAGAACCTTTTTAGA 10423 | ||||| ||| | || | || |||| ||||| |||||||||||||| ||| | Sbjct 304 AGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGC 245 Query 10424 GACGGCAGCGGACAGGAGGCCGAGGAGATGCGTGACTGTCGGTTTCGGGCAGGGAAGGAG 10483 ||| || ||| ||||| ||||||||||||| || | ||| | |||||| ||| Sbjct 244 GACCGCGAGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAG 185 Query 10484 CTGCGGGCTGGGCTCGACAGAGAAAAGCTTTTGCGCGCGGAGGATTTTGAACCTGACCAG 10543 |||||| ||| || | | || | | |||||| |||||| ||||| || ||| | Sbjct 184 CTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCG 125 Query 10544 CGTTCGGGCATCAGTCCGGCCCGCGCCCACGTGACGGCCGCCAATCTAGTCACCGCATAC 10603 || | || || ||||| || ||||| |||||| |||||||| | || || ||||||||| Sbjct 124 CGAACCGGGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATAC 65 Query 10604 GAGCAGACGGTGAACGAGGAGCTTAACTTCCAAAAAAGCTTTAACAACCACGT 10656 ||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 64 GAGCAGACGGTGAACCAGGAGATTAACTTC--AAAAAGCTTTAACAACCACGT 14 >seq272266 Length=497 Score = 178 bits (196), Expect = 3e-40 Identities = 341/499 (68%), Gaps = 13/499 (3%) Strand=Plus/Plus Query 5974 TACCTCACCCCTGAGCGGTTCGTTGGTCCAGCACAACCTACCGCCTTTTCGGGAGCAAAA 6033 |||||| || | || | |||||||||||||| | | ||||| || || ||||| || Sbjct 3 TACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6034 CGGGGGAAGTACGTCTAGCAAGTTGGAAGCCGGTGGGTCGGCGTCGATGGTGAAGATGCC 6093 || || || ||||||| | |||| ||||| ||||| | ||| |||| || Sbjct 63 TGGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 122 Query 6094 GGGGAGGAGAGACTTGTTAAAATAATTAAT-TTCCACGCGGTGTTGCAAG------GCCA 6146 ||| || || | || || || | || || || | ||||||| ||| Sbjct 123 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCC----TTGCAAGTCTAGCGCCT 178 Query 6147 AGTCCCACTTTTTGACGGCCAGAGCCCTCTCGTACGGATTAAGGGGAGGACCCCAGGGCA 6206 | ||| | |||| || || | |||||| || || || || |||||||| |||| Sbjct 179 GCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCA 238 Query 6207 TGGGGTGAGTAAGGGCAGAAGCGTACATGCCGCAAATGTCGTACACATAAAGAGGCTGGC 6266 ||||||| || || || || ||||||||||||||||||||||| || | || |||| | Sbjct 239 TGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTC 297 Query 6267 GTAGAACGCCGATGTAAGTAGGATAGCAGCGCCCGCCCCGAATGCTGGCCCTGACGTAAT 6326 || | || | || ||||| ||||| | || || || |||||||| | ||||||| Sbjct 298 TGAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAAT 357 Query 6327 CGTACATCTCATGGGACGGGGCCAAGAGGCCGCTCCCCAGGTGGGTTTTTTGGGGTTTCA 6386 |||| | || || || || || | |||| || || |||| | | ||| | | Sbjct 358 CGTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCT 417 Query 6387 CGGCGCGGTAGGCGATCTGTCGGAAGATGGCGTGGGAGTTGGAAGAGATGGTAGGCCGCT 6446 | || ||| | || ||||| | ||||||||| || |||||||| || ||||| || |||| Sbjct 418 CTGCTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCT 476 Query 6447 GAAACACGTTAAAGCTGGC 6465 | || ||||| |||||||| Sbjct 477 GGAAGACGTTGAAGCTGGC 495 >seq295602 Length=499 Score = 120 bits (132), Expect = 7e-23 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 14059 ATCCAGCCTCTTACAAAAGACAGTAAAGATCGCAGTTACAACCTACTGCCCAA---CAAC 14115 ||| | || || ||| | ||||| || | ||||||||||||||| | ||| || | Sbjct 299 ATCAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAGC 358 Query 14116 ACCGAAACGGCGTATCGCAGCTGGTTCTTGGCATACAACTACGGAGACCCCGACAAGGGA 14175 ||| || ||| |||||||||| | | |||||||||||||| ||||| | | ||| Sbjct 359 ACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACCGGA 418 Query 14176 GTGCGCTCGTGGACGTTGCTGACGACTACTGACGTAACATGCGGCTCGCAGCAAGTCTAT 14235 | ||||| ||||| |||| ||| |||||||||| ||||||||| |||| ||||| Sbjct 419 ATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTCTAC 478 Query 14236 TGGTCTCTGCCCGATATGATGC 14257 ||||| |||| | ||||||| Sbjct 479 TGGTCGTTGCCAG-CATGATGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108330542018124