Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5389 331 1e-85 seq3746 95.1 1e-14 >seq5389 Length=131951 Score = 331 bits (366), Expect = 1e-85 Identities = 518/729 (71%), Gaps = 9/729 (1%) Strand=Plus/Plus Query 53239 CCGTG-AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGT 53297 ||||| |||||||| || | || | |||| || ||||||||| |||| || |||| Sbjct 36686 CCGTGGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACGCACGCCTCGCCCACGCTGT 36745 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| || || || | || ||| | |||||||||||| |||| |||||||| | Sbjct 36746 TCAACGCCGGCACCAACCGACCGCAGCTCAGCAGCTGCTTCCTGCTGGCCATGAAGGACG 36805 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || ||||| ||||||||||| ||||||||| |||| || | ||||||||||| | ||| Sbjct 36806 ACAGCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGTCGGCGG 36865 Query 53418 GTGGTATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACG 53476 | || ||||| | | || | | |||| || | || | ||| || || Sbjct 36866 GCGGCATCGGCGTGGCGGTGAGCTG-CATCCGCGCCACGGGGAGCTACATCGCCGGCACC 36924 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 |||||| | || | || | ||||| ||||| ||||| | |||||||||||| || ||| Sbjct 36925 AACGGCAACTCCAACGGCCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGCTAC 36984 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || ||||||| || |||||| ||| | |||||||| ||||| ||||| |||||| Sbjct 36985 GTGGACCAGGGCGGCAACAAGCGCCCCGGGGCCTTCGCCATGTACCTGGAGCCCTGGCAC 37044 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 |||||| | | ||||| || |||||| ||| ||| | || ||| |||| | Sbjct 37045 GCCGACGTCTTCGAGTTCCTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAGCGCGCC 37104 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 || |||||||| ||| || ||||||| || ||||| |||||| | | ||||||| | Sbjct 37105 CGCGACCTGTTCTACGGC-ATGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGTCCAA 37163 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTG 53774 | |||| |||| |||||||||||| ||||| |||||||| || | | ||| || || | Sbjct 37164 CCAGGAATGGTCCCTGATGTGCCCCAACGACTGCCCCGGGCTGGACGAGTG-CTGGGGGG 37222 Query 53775 AGGAGTTTAACGAGATGTA-TCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 |||||||| | || |||| | | | |||| | |||| |||| ||| Sbjct 37223 AGGAGTTTGAGAAGCTGTACACCGGC-TACGAGGCGGCGGGCAAGGCCAAGCGCGTGGTG 37281 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| | |||| ||| | || ||| || || ||| ||||||||| ||||| ||| Sbjct 37282 AAGGCACAGCAGGTGTGGCACGCCATCATCGAGTCGCAGACGGAGACGGGCACGCCCTAC 37341 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| ||||||||| | |||| |||||||||||| ||||| | ||| |||||| Sbjct 37342 ATGCTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCTGCATCAAG 37401 Query 53954 TCGAGCAAC 53962 || |||||| Sbjct 37402 TCCAGCAAC 37410 Score = 102 bits (112), Expect = 9e-17 Identities = 348/526 (66%), Gaps = 41/526 (8%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA--CTGAAGCGGCGCGCAAGTCC 55195 |||||| ||| | ||||||| || | ||||||| | | || |||| | | ||| Sbjct 37554 GAACCTCAACAAGATCATCGAGGTCAACTTCTACCCGGTGCCGGAG-GGCGAG-AGGTCG 37611 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| ||||||||||| |||| |||||| || |||||| |||||||| |||||| || Sbjct 37612 AACAAGCGGCACCGGCCTATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTG 37671 Query 55256 CTCGGATTGCCCTTCGA---CTCGGAA--CCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | |||||||| | |||| || |||| | ||| | |||||||| Sbjct 37672 ATGCGCTACCCCTTCGAGAGCCCGGAGGCCCAGCTCC-----TCAACAGGCACATCTTCG 37726 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCG---TGTCATCTGGCTATG-AGCGAGGG 55365 || | ||||||| || ||||| ||||||| || | | ||| | ||| ||| Sbjct 37727 AGAC-CATCTACCACGCGGCGCT---GGAGTCGAGCTGCGAGCAGGCGGCGGAGCT-GGG 37781 Query 55366 GACCTACGAGACGTTCC-GTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTAT 55424 | | |||||||||| || | | | | || | | |||||| | || |||| ||| | | Sbjct 37782 GCCGTACGAGACGTACCCGGGCTGCCCCGTCAG-CAAGGGGGTGCTGCAGTACGACATGT 37840 Query 55425 GGGGCAAGTCTGACCCCA------TGTTTGAC---AAGTTG---AAGCATGACATTCACT 55472 ||||| | | ||||| | | ||| ||| || ||| | | || | Sbjct 37841 GGGGCGTGAC---CCCCACCGACCTCTGGGACTGGAAGCTGCTCAAGGAGAAGATCGCCA 37897 Query 55473 TGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 | ||| | | ||| |||||| ||||||| ||||| ||||| || ||||| |||| Sbjct 37898 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCACAGA 37957 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| ||||| | |||| | ||| ||| || | Sbjct 37958 TCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACCTGTACACCCGCAGGGTGC 38017 Query 55593 TAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 | | || ||||| || |||||| ||| | | |||||||| Sbjct 38018 TCTCGGGAGAGTTCCAGATCATCAACCCCCACATGCTGAAGGACCT 38063 >seq3746 Length=247131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||| || ||||||||||| || | || || || |||||| Sbjct 27641 GTGAAGATGTAACGGGGGCTAGCAGCATCCTTGCCCCCGTTGATGCGGGTACCGAACTGT 27582 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| ||||| ||||| ||||||| |||||| || ||||| |||| ||||| Sbjct 27581 CCCAGGGGCTGGAGGATGTTGACGTTGTTGCTGCCCACAAAGTTCTGCGCCAGGTTCACG 27522 Query 152149 ATCGT 152153 || || Sbjct 27521 ATGGT 27517 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||||||||| || | || |||||||| ||| Sbjct 27641 GTGAAGATGTAACGGGGGCTAGCAGCATCCTTGCCCCCGTTGATGCGGGTACCGAACTGT 27582 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| | || ||| | ||||||| |||||||||||| || |||| ||| || Sbjct 27581 CCCAGGGGCTGGAGGATGTTGACGTTGTTGCTGCCCACAAAGTTCTGCGCCAGGTTCACG 27522 Query 117425 ATCGT 117429 || || Sbjct 27521 ATGGT 27517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544292313834600