Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5389 324 2e-83 seq742 167 3e-36 seq3746 102 9e-17 seq3564 93.3 5e-14 seq300154 84.2 2e-11 seq300152 84.2 2e-11 >seq5389 Length=131951 Score = 324 bits (358), Expect = 2e-83 Identities = 863/1304 (66%), Gaps = 51/1304 (4%) Strand=Plus/Minus Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 |||||||| | ||||| ||||| | | ||||||||| || |||||||| |||||| Sbjct 38003 TACAGGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCCGTGGAG 37944 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502 || || ||||| || | | || ||| |||| || ||||||||| ||| | ||| Sbjct 37943 GCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 37884 Query 80503 CGCAAATCTGACCAAAAATCAACCCCAACGCT--------GTGAC--CCCACATGTCGTG 80552 ||| || || |||| | | || || |||||||||||| Sbjct 37883 T-------TGAGCAGCTTCCAGTCCCAGAGGTCGGTGGGGGTCACGCCCCACATGTCGTA 37831 Query 80553 CTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCC 80607 ||||| | |||| | |||| | || |||| | ||||||||||||| ||| ||| Sbjct 37830 CTGCAGCACCCCCTTGCTGACGGGGCAG--CCCGGGTACGTCTCGTACGGCCCCAGCTCC 37773 Query 80608 GTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACG 80664 | | ||| |||| || |||||||| | |||||||| || ||| ||| |||| | Sbjct 37772 GCC---GCCTGCTCGCAGCTCGACTCCA---GCGCCGCGTGGTAGATGGTCTCGAAGATG 37719 Query 80665 CCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACG 80724 | |||| | | |||| ||| ||||| | ||| ||||| ||||| || Sbjct 37718 TGCCTGTTGAGGAGCTGGGCCTCCGGGCTCTCGAAGGGGTAGCGCATCAGGATGAAGGCG 37659 Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784 || ||||||||||| ||||||||| |||| || ||||| ||||||||||| | |||| || Sbjct 37658 TCGGCCAGGCCCTGCACGCCGATGCCGATAGGCCGGTGCCGCTTGTTCGACCTCTCGCCC 37599 Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844 ||||| | ||||| ||||| ||||||| ||| ||||| | ||| Sbjct 37598 TCCGGCACCGGGTAGAAGTTGACCTCGATGATCTTGTTGAGGTTCTTCACGATCACCTTG 37539 Query 80845 GTAACATCATGAAGTTTCTGAAAGTCGAAT-TG-GTTCC-CCTTCAC--AAATGCCGGAA 80899 || || || |||| |||||||| || | || || |||| | ||| | | Sbjct 37538 GTGACGCTGGCCAGCTTCTTGAAGTCGAAGGTGCGCTCGGCCGTCACGTACATGTTG--A 37481 Query 80900 GGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTT 80959 | | ||| ||||| ||||||||||| ||||| || | || |||||| ||| | Sbjct 37480 GCGCGATGGAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCT 37421 Query 80960 CCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019 ||||||||| || ||||| || |||||||| | |||||| |||| ||||| Sbjct 37420 CCGTGCACAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGC 37361 Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079 | |||||||||||| |||||| || || || ||||| ||| |||| || |||||||| Sbjct 37360 AGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGT 37301 Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCG---GAATTTGCCTTCGGCCACATACTTGG 81136 ||| | || | ||||| ||||| ||| | ||||| | ||| | || || Sbjct 37300 GCCACACCTGCTGTGCCTTCACCAC---GCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGG 37244 Query 81137 CGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGG 81195 ||| |||||| || |||| | || || || | ||||| ||||| ||| Sbjct 37243 TGTACAGCTTC-TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGG 37185 Query 81196 CACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAG 81255 ||||||||| ||| || || | ||| || ||||||||| ||| |||||||| Sbjct 37184 CACATCAGGGACCATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCAC 37125 Query 81256 AGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 | | || ||||||||||||| |||| |||||| | ||| ||| || ||| Sbjct 37124 ATGCCGTAGAACAGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCC 37065 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG- 81374 || || || | || ||| || ||||| |||||||| |||| ||||| | ||| ||| Sbjct 37064 AGGAACTCGAAGACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGC 37005 Query 81375 --ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432 ||| ||||||| ||||| || || || ||| | || |||| ||| || | Sbjct 37004 TTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACC 36945 Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492 | || | || | ||||| || || |||| |||| ||||||| | ||| Sbjct 36944 AGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGCGCGGATGCAGCTC 36885 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 | | | |||||||| || | | |||| || || | || ||| | || | || || Sbjct 36884 ACCGCCACGCCGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCG 36825 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || ||||||||||| || | |||||| | |||| ||| ||||| | ||| || Sbjct 36824 TAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGT 36765 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | || | |||||| |||||||| || || | ||||| |||| Sbjct 36764 CGGTTGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAA 36721 >seq742 Length=2242023 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || || |||||||| ||| | || Sbjct 1675059 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 1675118 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 1675119 GACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1675178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 1675179 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1675238 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || ||||| ||| | ||||| | ||||| Sbjct 1675239 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTTCGTCTGAGGGGTGG 1675285 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | | Sbjct 1678279 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1678338 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || || || ||||| ||| Sbjct 1678339 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1678398 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 1678399 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1678458 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || |||||||| |||||||| ||| ||||||| Sbjct 1678459 ATCCAGAAAGAATCCACCCTTCATCTTGTCCTGCGTCT 1678496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || ||||||||||| || || || ||||| |||||| | || || || | Sbjct 1667466 TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAGAGGCTGATCTTCG 1667525 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || || |||| || ||||| | ||||| || |||| || ||||| | Sbjct 1667526 CCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCGA 1667585 Query 27602 CTCTTCATCTAGTCTTGCGTCT 27623 | || ||||| ||| | ||||| Sbjct 1667586 CCCTCCATCTTGTCCTTCGTCT 1667607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||| |||||| ||||| |||||||| || || |||||||| || || |||||||||||| Sbjct 1665650 CTAAAATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATCACCCTTGAGGTTGAGC 1665709 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAA 27503 || | |||| || | |||| | |||||||| || |||||||| Sbjct 1665710 CAAGCGATACTATCGAAAATGTAAAGGCTAAGATCCAGGACAA 1665752 >seq3746 Length=247131 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||||| || ||||||||||| || || ||| | ||| | ||| |||| Sbjct 27517 ACCATCGTGAACCTGGCGCAGAACTTTGTGGGCAGCAACAACGTCAACATCCTCCAGCCC 27576 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 |||||||| || ||||| || ||| |||||||||||||| ||| ||||||||||| Sbjct 27577 CTGGGACAGTTCGGTACCCGCATCAACGGGGGCAAGGATGCTGCTAGCCCCCGTTACATC 27636 Query 32245 TTCACC 32250 |||||| Sbjct 27637 TTCACC 27642 >seq3564 Length=3914096 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| |||||||||| || |||| || || |||||||| | |||||| Sbjct 3070150 ACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGC 3070091 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| ||||| || || || ||||| ||| |||| Sbjct 3070090 TCTTCCTGTTGCAGGCGTCCTTGTAGAGGATGTATGGCGTGCCCGTCTCCGTCTGGGACT 3070031 Query 81068 TGAGGATGGCGTCCCAAATCTCGC-GCGCCTTGACCAC 81104 || |||||||| ||| | || || | ||||| ||||| Sbjct 3070030 CGATGATGGCGTACCACA-CTTGCTGGGCCTTCACCAC 3069994 >seq300154 Length=373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 ||||| || |||||||||||| ||||| ||||| || ||| || || |||||||| Sbjct 95 GCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTG 154 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||| |||| || ||||| |||||| | || || || ||||| ||| |||| ||| Sbjct 155 AAGAAGAGGGGGCTAATGCCCGGTCTGACTTTCTCCAATGAGCTCATCAGCAGGGATGAG 214 Query 64846 G 64846 | Sbjct 215 G 215 >seq300152 Length=362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 ||||| || |||||||||||| ||||| ||||| || ||| || || |||||||| Sbjct 95 GCTTTCGCTGCTGTGGAAGGAATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTG 154 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||| |||| || ||||| |||||| | || || || ||||| ||| |||| ||| Sbjct 155 AAGAAGAGGGGGCTAATGCCCGGTCTGACTTTCTCCAATGAGCTCATCAGCAGGGATGAG 214 Query 64846 G 64846 | Sbjct 215 G 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567263324208240