Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq213072 360 4e-95 seq272266 334 2e-87 seq256110 163 6e-36 seq295602 147 5e-31 >seq213072 Length=511 Score = 360 bits (398), Expect = 4e-95 Identities = 288/342 (84%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 5944 TCGGCGCTGAGGGTGTCAGTTTCTACAAACGAGGAGGATTTGATGTTAACCTGCCCGGAG 6003 || ||||| || |||||||||| | |||||||||||||||||| || ||||| || | | Sbjct 174 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 233 Query 6004 GCGATGCCTTTGAGAAGGGCGGGGTCGAGCTGGTCGGCAAAAACAAtttttttATTGTCC 6063 | |||||||||||| ||| | || | |||||| | |||| |||| ||||| | ||| Sbjct 234 GTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAG-AAAAGCAATCTTTTTGT-GTCA 291 Query 6064 AGCTTAGTGGCAAAGGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGGAACGCAGG 6123 ||||| |||||||| |||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 292 AGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGG 351 Query 6124 GTCTGGTTTTTGTCGCGGTCGGCGCGCTCCTTGGCGGCAATGTTGAGCTGCACGTACTCG 6183 || ||||||||| |||| ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 352 GTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 410 Query 6184 CGCGCCAGGCAGCGCCACTGCGGAAAGACGGTGGTGCGCTCGTCGGGGAGCAGACGCACG 6243 ||||| | ||| ||||| | ||| ||||||||||||||||||||||| | ||| ||||| Sbjct 411 CGCGCAACGCACCGCCA-TTCGGGAAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACG 469 Query 6244 CGCCAGCCGCGGTTGTGCAGCGTCACCAGGTCGACGCTGGTG 6285 ||||| |||||||||||||| || || ||||| ||||||||| Sbjct 470 CGCCAACCGCGGTTGTGCAGGGTGACAAGGTCAACGCTGGTG 511 >seq272266 Length=497 Score = 334 bits (370), Expect = 2e-87 Identities = 375/497 (75%), Gaps = 6/497 (1%) Strand=Plus/Plus Query 6289 ACCTCGCCGCGCAAGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCTTTGCGTGAACAAAAG 6348 ||||| ||||| | |||||||||||||||||||||||||||||| ||||| || || || Sbjct 4 ACCTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAT 63 Query 6349 GGGGGTAACACGTCCAGTTGGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGAAGACGCCG 6408 || |||| ||| || || |||| ||||||||| ||||| | ||| ||||| ||| Sbjct 64 GGCGGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCG 123 Query 6409 GGAAGCAAGTGGGAGTCAAAGTAGTCAA--TGGGAACGGATGGCTGGTTGAGGGCGCGCT 6466 || |||| | | | ||| |||||||| | | | | | | || || || || ||| Sbjct 124 GGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATC--CTTGCAAGTCTAGCGCCTGCT 181 Query 6467 GCCAGTTTTGGGCGGCCCAGGCCCGTTCCAAGGGATTCAGCGGAGGGCCCCAGGGCATGG 6526 |||| ||||||| || || || | || || || || || ||||| ||||||| Sbjct 182 GCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGG 241 Query 6527 GGTGGGTGAGGGCAGAGGCGTACATGCCGCAGATGTCGTAAACGTAGAGGGGCTCCTCGA 6586 |||||||||| || ||||||||||||||||| ||||||||||||| ||||||||| || Sbjct 242 GGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGA 300 Query 6587 GAACTCCGATGTAGGTGGGGTAGCAGCGCCCTCCGCGAATACTGGCGCGCACGTAATCGT 6646 | | ||| | || || |||||||| | || ||||| || ||||||||||||||||||| Sbjct 301 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGT 360 Query 6647 ACATCTCGTGCGAGGGGGCCAGCAGGTTGTGGCCCAGGTTGGTGCGGGCCGGCCGCTCGG 6706 | | ||||||||||| || || |||| | | || |||||| | ||||| ||| |||| | Sbjct 361 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTG 420 Query 6707 CGCGGTAAAGGATCTGGCGAAAAATGGCGTGGGAGTTGGAGGAGATGGTGGGCCGCTGGA 6766 | ||| || ||||| | || ||||| || |||||||| || ||||| || ||||||| Sbjct 421 CTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGA 479 Query 6767 AGATGTTAAAGGCGGCG 6783 ||| ||| ||| |||| Sbjct 480 AGACGTTGAAGCTGGCG 496 >seq256110 Length=496 Score = 163 bits (180), Expect = 6e-36 Identities = 205/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 10722 CTGGACCTGGAAGAGGGGGAGGGCTTGGCCCGGTTGGGCGCCCACGTGCCGGAGCGCCAT 10781 |||||| |||| ||||| |||||| |||| ||| | || || | | || ||||| || Sbjct 367 CTGGACTTGGAGGAGGGCGAGGGCCTGGCGCGGCTAGGAGCGCCCTCTCCTGAGCGGCAC 308 Query 10782 CCGCGGGTGCAGCTGGCCCGCGACAGCCGCGCGGCGTACGTGCCGCGGCAGAACCTGTTT 10841 || ||||||||||| || || | || | |||||||||||||||||||||||||||| Sbjct 307 CCAAGGGTGCAGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTT 248 Query 10842 CGGGACGG-GAGCGGCGAAGAGGGGGAAGAGCTTCGCGACTGTCGGTTTCGGGCGGGGCG 10900 || ||| | ||| || || ||| || ||| | || || | ||| | || ||||| Sbjct 247 CGCGACCGCGAG-GGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCG 189 Query 10901 CGAGCTGCGCGCGGGGCTGGACCGCGAGCGGCTGCTGCGGGCCGAGGACTTTGAGGCCGA 10960 ||||||||| || ||| | ||||||||| ||||||| | |||||||||||| |||| Sbjct 188 CGAGCTGCGGCATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGA 129 Query 10961 GGAGGGGCGCGGGGTGAGCTCGGCGCGCGCGCACCTGGC 10999 | | | |||| | || | |||||||| ||| |||| Sbjct 128 CGCGCGAACCGGGATTAGTCCCGCGCGCGCACACGTGGC 90 >seq295602 Length=499 Score = 147 bits (162), Expect = 5e-31 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 14610 GTAATTAAACCCGTGCCCAAGGACGGCAAGGAGCGCAGTTACAACCTGCTGCCCGACAAC 14669 || || |||||| || | ||||| ||||| | |||||||||||||| | | | || Sbjct 296 GTGATCAAACCCCTGACAGAGGACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGAC 355 Query 14670 CAGACCAACACGGCCTACCGCAGCTGGTACCTGGCCTACAATTACGGCGACCCCCTGAAA 14729 ||| ||| ||||||||||||||||| || ||||| ||||||||||| | || Sbjct 356 AGCACCTTCACCCAGTACCGCAGCTGGTACCTTGCATACAACTACGGCGACCCTCAGACC 415 Query 14730 GGCGTCCGCTCGTGGACGCTGCTGACCACGCCGGACGTGACCTGCGGCTCGGAGCAGGTG 14789 || ||||||| ||||| ||||| ||| || ||||| |||||||||||||||||||| Sbjct 416 GGAATCCGCTCATGGACCCTGCTTTGCACTCCTGACGTAACCTGCGGCTCGGAGCAGGTC 475 Query 14790 TACTGGTCGCTGCC 14803 ||||||||| |||| Sbjct 476 TACTGGTCGTTGCC 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113491413369778