Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq198807 174 1e-38 seq5983 174 1e-38 seq4474 174 1e-38 >seq198807 Length=933 Score = 174 bits (192), Expect = 1e-38 Identities = 143/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||| || | ||| || ||||| || || ||||| |||||||| Sbjct 743 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 802 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| ||||| |||| ||||||||||||||| || |||||| | ||||||| Sbjct 803 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 856 >seq5983 Length=3405033 Score = 174 bits (192), Expect = 1e-38 Identities = 143/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||| || | ||| || ||||| || || ||||| |||||||| Sbjct 1577616 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 1577557 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| ||||| |||| ||||||||||||||| || |||||| | ||||||| Sbjct 1577556 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 1577503 Score = 170 bits (188), Expect = 2e-37 Identities = 142/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 30216 CTGCNNNCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275 |||| |||||| ||||| || ||||| || |||||||||||||| |||||||| || | Sbjct 1576459 CTGCGTGCATGTCTGTGTATTCGGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGC 1576400 Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30335 ||||||| ||||| |||| | || |||||| | || |||| || || | |||||||| Sbjct 1576399 CCAGGTCGCCCTCCTCCCGCTCCTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGT 1576340 Query 30336 TGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||||||||||| || ||||||||||| ||||| ||||| || ||||| || Sbjct 1576339 TGGCGTCCCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGAATTCGTGGAACC 1576285 Score = 111 bits (122), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 || |||||||||||||||||| ||||||||| | ||| || |||||| | || ||| || Sbjct 1577112 CTCTGGGGTTCCAGGCGCACATGATGATGCGGCGGTCCTCCGGGTTGCTTCTTATGGTGT 1577053 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30219 ||||| | || |||||||| ||||| ||| | |||||||||||||| Sbjct 1577052 CCACGACCTTCTGCAGCTGGTCCACGCCCTTACCCGAGTAGTCTGC 1577007 >seq4474 Length=502254 Score = 174 bits (192), Expect = 1e-38 Identities = 373/552 (68%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 110092 CTCTCGTAGACTTTAAACTCGTACCGTATCCCGTTCTCCTCCTGAGTCTCAACGGGAACG 110151 |||| ||| || | ||| |||| | || |||||||||||||| ||| | || Sbjct 9417 CTCTGGTACACCTGGAACCGGTACTGGATGCCGTTCTCCTCCTGCAGCTCCGACGACACC 9358 Query 110152 CCTGGAAACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCG 110211 || ||| |||||||||| || || | | | || | || |||| || ||||| Sbjct 9357 CCAGGATACTCTGGCAGCAGCCGGAACTGGGCCGGGCTGATGTCAGGGAAGAACGTGTCA 9298 Query 110212 CACGCAAATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATG 110271 | || || ||| | | | ||||| |||| |||| | |||| ||||||| Sbjct 9297 CTCGGGAACTGCTTTAGGATCCGCGTGACGAACAACCTCCGGGGGCACGGGGTCTCCATC 9238 Query 110272 AGCTCCCCGTAGAGAGAGCTACCTCCAATCACCCAGATCTGGTCGGCTACGTCGGCGAGA 110331 | |||| ||| | |||||| || ||||||| ||| | |||||| || | | | | Sbjct 9237 ACCTCCGAGTACATAGAGCTGCCGCCAATCAACCACACCTGGTCTGCCA-GCAGACCCTC 9179 Query 110332 GTTGTCGTCGCT-AGCTCTACGGCGGAACTAAAGTCGGACGCCAGGTGATGAGCTCCAGA 110390 | |||| || | ||| || | ||| |||||||| ||||||||||| Sbjct 9178 CGGGCCGTCCAGGAGGCGGAGGGCAGAGGGCAGGTCCCGGGCCAGGTGGTGAGCTCCAGA 9119 Query 110391 CGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATT 110450 ||| || | | |||| || || || || | |||||| ||||| | || |||| || Sbjct 9118 CGGCGGGGCCTCCAGCTGCCGACTCAGAACGATGTTTATTCTGTCGTTAAGCGGTCGGTT 9059 Query 110451 CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTG-CCTC 110509 ||| || ||||||||| ||||||||||| ||||| || ||||||||||||||| |||| Sbjct 9058 CTTCTCCGGGATGGAGTTCCAAGTCTTTCGGCCCATGATGACCACGTTCTGCTTGTCCTC 8999 Query 110510 TG--ACTGAAG---ACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCT 110564 | | | || ||| | ||||| || || ||||| || || ||| ||||| Sbjct 8998 CGCACCAGGAGTCCTCGTTACCGTCAACCGGCGGAAATGTTTGAACTCGTTGTTGAGTCT 8939 Query 110565 CGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCAC 110624 | || |||||||| |||||||| || | ||||||||| ||| |||||| ||||||| Sbjct 8938 AGTGGGGTGCCACGGGAGATCTCCTTTATAGCCGATGCCCCCGTCCGGACACACGGCCAC 8879 Query 110625 GATACCGTTCAG 110636 ||||| ||| || Sbjct 8878 GATACAGTTTAG 8867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404193820819284