Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5983 136 4e-27 seq198807 131 1e-25 >seq5983 Length=3405033 Score = 136 bits (150), Expect = 4e-27 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAATGGGGAGCTGTC 34635 ||||| || || ||||||||| |||| ||||| |||||||| |||| || |||||||| Sbjct 1577516 ATGGCCCTGCCTCCGTGCCACGCCCTGTGCCAGTTCTACGTAAGCGAC-GGCGAGCTGTC 1577574 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| ||||| || || || |||||||| | || ||||| |||||||| || || Sbjct 1577575 CTGCCAGCTGTATCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAG 1577634 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || ||||||||||| || ||| Sbjct 1577635 CTACGCCCTCCTGACCTACATGATCGCCCACGTC 1577668 Score = 136 bits (150), Expect = 4e-27 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||| || || || ||||| || || |||||||| ||||| || | Sbjct 1577668 GACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAG 1577609 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGA 6734 |||||||| || || || ||||| ||||||||||||||||| || |||| ||||||| Sbjct 1577608 GCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCC-GTCGCTTACGTAGA 1577550 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | ||||| |||| ||||||||| || || ||||| Sbjct 1577549 ACTGGCACAGGGCGTGGCACGGAGGCAGGGCCAT 1577516 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 ||||||| |||||||||| || ||| ||||||||||||||||| |||| || | Sbjct 1576289 CCACGAATTCCAAGGAGCTGTCTGAGAAGGGCGTGAAGATCTGGGACGCCAACGGTTCCC 1576348 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 | || || ||||| || || ||| ||||||||||||||| ||||||| || | Sbjct 1576349 GGGAGTTCCTGGATAAAAACGGCTTCAAGGAGCGGGAGGAGGGCGACCTGGGCCCCGTGT 1576408 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| ||||||||||| |||||||| || || || Sbjct 1576409 ACGGCTTCCAGTGGAGGCACTTTGGAGCCGAATA 1576442 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| ||||| || ||||||| ||||||||||||| Sbjct 1576442 TATTCGGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCCTCC 1576383 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || ||| || || ||||| || || || || |||| ||||||||||||||| Sbjct 1576382 CGCTCCTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGTTGGCGTCCCAGATCTTC 1576323 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || |||||||||| ||||||| Sbjct 1576322 ACGCCCTTCTCAGACAGCTCCTTGGAATTCGTGG 1576289 >seq198807 Length=933 Score = 131 bits (144), Expect = 1e-25 Identities = 123/154 (80%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || |||||||| || || || ||||| || || |||||||| ||||| || | Sbjct 691 GACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAG 750 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGA 6734 |||||||| || || || ||||| ||||||||||||||||| || |||| ||||||| Sbjct 751 GCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCC-GTCGCTTACGTAGA 809 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | ||||| |||| ||||||||| || || ||||| Sbjct 810 ACTGGCACAGGGCGTGGCACGGAGGCAGGGCCAT 843 Score = 131 bits (144), Expect = 1e-25 Identities = 123/154 (80%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAATGGGGAGCTGTC 34635 ||||| || || ||||||||| |||| ||||| |||||||| |||| || |||||||| Sbjct 843 ATGGCCCTGCCTCCGTGCCACGCCCTGTGCCAGTTCTACGTAAGCGAC-GGCGAGCTGTC 785 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| ||||| || || || |||||||| | || ||||| |||||||| || || Sbjct 784 CTGCCAGCTGTATCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAG 725 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || |||||||| || || ||| Sbjct 724 CTACGCCCTCCTGACCTACATGATTGCCCACGTC 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445867406839440