Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_029898.1 Length=37545 Score E Sequences producing significant alignments: (Bits) Value seq272266 214 4e-51 seq256110 176 1e-39 seq213072 154 4e-33 >seq272266 Length=497 Score = 214 bits (236), Expect = 4e-51 Identities = 347/492 (71%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 6384 CTCTCCACGCAGGCGCTCGTTGGTCCAAGCCAGACGCCCACCTTTGCGAGAGCAGAAAGG 6443 |||||| || ||||||||||||||||| || || || || ||||| |||||||| || Sbjct 6 CTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGG 65 Query 6444 GGGGAGGACATCCAGGTA-GTCTTCGGGGGGCGGGTCGGCATCGATGGTGAAGATGCCGG 6502 || ||| || || | |||| || || ||||| || || | ||| |||| |||| Sbjct 66 CGGTAGGGGGTCTAGCTGCGTCT-CGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGG 124 Query 6503 GTAGGAGGGTGGTGTTAAAGTAGGAGATGGAGGCGGGGTCTTGCAAG-----CGC-TGCT 6556 | || ||| | || |||||| || | |||||||| ||| |||| Sbjct 125 GCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATC---CTTGCAAGTCTAGCGCCTGCT 181 Query 6557 CCCAGGCGCGCATGGCGAGGGCCCGATCGAAGGGGTGCAGGGGGCGCCCGGCGGGGAAGG 6616 ||| ||||| ||| || || || ||| | |||| || ||| | || || | || Sbjct 182 GCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGG 241 Query 6617 GGTGGGTGAGGGCGCTGGCATACATGCCACAGATGTCGTAGACGTAGATGGGTTCCTCCA 6676 |||||||||| ||| ||| |||||||| || |||||||| |||| || ||| || | Sbjct 242 GGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCTGA 300 Query 6677 GGACCCCCAGGTAAGAGGGGTAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCGT 6736 | | || || || | ||||| || | || ||||||||||||||||||||||| |||| Sbjct 301 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGT 360 Query 6737 AGAGCTCCATGGAGGGTGCGAGCAGGACGCTGCCGAGGTTGGCGCGGTTGGGTCGCTCGG 6796 | || || ||||| ||||| ||| || ||||||||| ||| ||| |||| | Sbjct 361 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTG 420 Query 6797 CCCGGTAGACCACCTGGCGGAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGGCGTTGGA 6856 | ||| || | | ||| | ||||||||| || |||||||| || ||||| || || |||| Sbjct 421 CTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGA 479 Query 6857 AGATGTTGAAGC 6868 ||| |||||||| Sbjct 480 AGACGTTGAAGC 491 >seq256110 Length=496 Score = 176 bits (194), Expect = 1e-39 Identities = 256/355 (72%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 10435 GGAGGGGGAAGGCCTGGCCCGGGTGGTGAGCGGGGG-TCCCGAGCGACACCCGCGCGTGC 10493 |||||| || |||||||| ||| | | ||||| ||| ||||| ||||| | |||| Sbjct 356 GGAGGGCGAGGGCCTGGCGCGGCTAG-GAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGC 298 Query 10494 AGGTGAAGCGCGACGCGAGCGAGGCGTACGTGCCTCGGCAGAACGTGCTGCGCGACCACC 10553 || ||||||| || || | |||||||||||||| ||||||||| || | ||||||| | Sbjct 297 AGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCG 238 Query 10554 CGGGCACGGAGGGAGAGGAGATGCGCGACCTGCGTTACCGCGCGGGGCGCCACATGC-GC 10612 ||| |||| ||||||||||| || | | || ||| |||||| | ||| || Sbjct 237 AGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGC 178 Query 10613 GTGCCCAAAA-----ACCGGGTGCTGCGCGACGTGGACTTCGAGGCGGAACCGCTGACGG 10667 || || || | ||| |||||||||| | |||||| ||| | || ||| || | Sbjct 177 ATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCG 118 Query 10668 GCATCAGCCCGGCGCGGGCCCACCTCGAGGCCGCCAACCTGGCCACGGCCTACGAGCAGA 10727 | || || || ||||| || ||| | | ||||||| |||||| || || |||||||||| Sbjct 117 GGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGA 58 Query 10728 CGGCGCGCGAGGAAGCCAACTTTCAAAAGACCTTCAACAATAACGTGCGCACGCT 10782 ||| | | |||| ||| ||||||| | ||| ||||| ||||||| ||||| Sbjct 57 CGGTGAACCAGGAGATTAAC-TTCAAAA-AGCTTTAACAACCACGTGCGTACGCT 5 >seq213072 Length=511 Score = 154 bits (170), Expect = 4e-33 Identities = 209/286 (73%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 6036 TTCCGCGCTAAAGTTGTCTACTTCTATGTACGAGGAAGATTTGACCGTGTATTCACCGGT 6095 ||| ||||||| ||||| ||| | ||||||| ||||||| |||||||| | Sbjct 173 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGA-----TATTCACCTGG 227 Query 6096 -----GGCGATGCCTTTGAGGTACTTGTCTTCCATCTGGTCGGCGAAGACGGTGGTCTTG 6150 || ||||||||||||| | ||||||||||| | ||| | | | ||| Sbjct 228 CCCGCGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG 286 Query 6151 TTGTCCAGCTTGGTGGCGAAGGAGCCGTAGAGGGCATTGGAGAGGAGCTTGGCAATGCTG 6210 | ||| ||||||||||| || || ||||||||||| ||||| || | |||||| ||| | Sbjct 287 T-GTCAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAG 345 Query 6211 CGGATGGTCTGGTTCTTGTCCCGGTCCGCCTGTTCCTTGGCGCGGATGTTGAGCTGGACA 6270 || | ||| ||||| ||| | || || || | |||||||| |||||| ||||| || Sbjct 346 CGCAGGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACG 404 Query 6271 TACTCGCGGGCCACGCAGCGCCACTCGGGGAACACGGTGGTGCGCT 6316 || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 405 TATTCGCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119413202829418