Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_029899.1 Length=37556 Score E Sequences producing significant alignments: (Bits) Value seq272266 217 4e-52 seq256110 172 1e-38 seq213072 154 4e-33 >seq272266 Length=497 Score = 217 bits (240), Expect = 4e-52 Identities = 349/494 (71%), Gaps = 17/494 (3%) Strand=Plus/Plus Query 6384 CTCCCCACGCAGGCGCTCGTTGGTCCAAGCCAGACGCCCACCTTTGCGAGAGCAGAAAGG 6443 ||| || || ||||||||||||||||| || || || || ||||| |||||||| || Sbjct 6 CTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGG 65 Query 6444 GGGGAGGACATCCAGGT-AGTCTTCGGGGGGCGGGTCGGCATCGATGGTAAAGATGCCGG 6502 || ||| || || | ||| ||| || ||||| || || | |||||||| |||| Sbjct 66 CGGTAGGGGGTCTAGCTGCGTC-TCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGG 124 Query 6503 GTAGGAGGGTGGTGTTAAAGTAG--GAGATGGCGGCGGGGTCTTGCA-----AGCG-CTG 6554 | || ||| | || |||||| | | || | |||||| |||| ||| Sbjct 125 GCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATC-----CTTGCAAGTCTAGCGCCTG 179 Query 6555 CTCCCAGGCGCGCATGGCGAGGGCCCGATCGAAGGGGTGCAGGGGGCGCCCGGCGGGGAA 6614 || ||| ||||| ||| || || || ||| | |||| || ||| | || || | Sbjct 180 CTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCAT 239 Query 6615 GGGGTGGGTGAGGGCGCTGGCATACATGCCACAGATGTCGTAGACGTAGATGGGTTCCTC 6674 |||||||||||| ||| ||| |||||||| || |||||||| |||| || ||| || Sbjct 240 GGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGT-GAGGGGCTCTCT 298 Query 6675 CAGGACCCCCAGGTAAGAGGGGTAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTC 6734 || | || || || | ||||| || | || ||||||||||||||||||||||| || Sbjct 299 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATC 358 Query 6735 GTAGAGCTCCATGGAGGGTGCGAGCAGGACGCTGCCGAGGTTGGCGCGGTTGGGTCGCTC 6794 ||| || || ||||| ||||| ||| || ||||||||| ||| ||| |||| Sbjct 359 GTATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTC 418 Query 6795 GGCCCGGTAGACCACCTGGCGGAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGGCGTTG 6854 || ||| || | | ||| | ||||||||| || |||||||| || ||||| || || || Sbjct 419 TGCTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTG 477 Query 6855 GAAGATGTTGAAGC 6868 ||||| |||||||| Sbjct 478 GAAGACGTTGAAGC 491 >seq256110 Length=496 Score = 172 bits (190), Expect = 1e-38 Identities = 254/355 (72%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 10435 GGAGGGGGAAGGCCTGGCCCGGGTGGTGAGCGGGGG-TCCCGAGCGACACCCGCGCGTGC 10493 |||||| || |||||||| ||| | | ||||| ||| ||||| ||||| | |||| Sbjct 356 GGAGGGCGAGGGCCTGGCGCGGCTAG-GAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGC 298 Query 10494 AGGTGAAGCGCGACGCGAGCGAGGCGTACGTGCCTCGGCAGAACGTGCTGCGCGACCACC 10553 || ||||||| || || | |||||||||||||| ||||||||| || | ||||||| | Sbjct 297 AGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCG 238 Query 10554 CGGGCACGGAGGGAGAGGAGATGCGCGACCTGCGTTATCGCGCGGGGCGCCACATGC-GC 10612 ||| |||| ||||||||||| || | | | ||| |||||| | ||| || Sbjct 237 AGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGC 178 Query 10613 GTGCCCAAAA-----ACCGGGTGCTGCGCGACGTGGACTTCGAGGCGGAGCCGCTGACGG 10667 || || || | ||| |||||||||| | |||||| ||| | || ||| || | Sbjct 177 ATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCG 118 Query 10668 GCATCAGCCCGGCGCGGGCCCACCTCGAGGCGGCCAACCTGGCCACGGCCTACGAGCAGA 10727 | || || || ||||| || ||| | | ||| ||| |||||| || || |||||||||| Sbjct 117 GGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGA 58 Query 10728 CGGCGCGCGAGGAAGCCAACTTCCAAAAGACCTTCAACAATAACGTGCGCACGCT 10782 ||| | | |||| |||||| ||||| ||| ||||| ||||||| ||||| Sbjct 57 CGGTGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGTACGCT 5 >seq213072 Length=511 Score = 154 bits (170), Expect = 4e-33 Identities = 209/286 (73%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 6036 TTCCGCGCTAAAGTTGTCTACTTCTATGTACGAGGAAGATTTGACCGTGTATTCACCGGT 6095 ||| ||||||| ||||| ||| | ||||||| ||||||| |||||||| | Sbjct 173 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGA-----TATTCACCTGG 227 Query 6096 -----GGCGATGCCTTTGAGGTACTTGTCTTCCATCTGGTCGGCGAAGACGGTGGTCTTG 6150 || ||||||||||||| | ||||||||||| | ||| | | | ||| Sbjct 228 CCCGCGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG 286 Query 6151 TTGTCCAGCTTGGTGGCGAAGGAGCCGTAGAGGGCATTGGAGAGGAGCTTGGCAATGCTG 6210 | ||| ||||||||||| || || ||||||||||| ||||| || | |||||| ||| | Sbjct 287 T-GTCAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAG 345 Query 6211 CGGATGGTCTGGTTCTTGTCCCGGTCCGCCTGTTCCTTGGCGCGGATGTTGAGCTGGACA 6270 || | ||| ||||| ||| | || || || | |||||||| |||||| ||||| || Sbjct 346 CGCAGGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACG 404 Query 6271 TACTCGCGGGCCACGCAGCGCCACTCGGGGAACACGGTGGTGCGCT 6316 || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 405 TATTCGCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119448224164932