Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_029902.1 Length=38073 Score E Sequences producing significant alignments: (Bits) Value seq272266 205 2e-48 seq256110 172 1e-38 seq213072 154 4e-33 >seq272266 Length=497 Score = 205 bits (226), Expect = 2e-48 Identities = 345/492 (70%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 6387 CTCTCCACGCAGGCGCTCGTTGGTCCAAGCCAGACGCCCACCTTTGCGAGAGCAGAAAGG 6446 |||||| || ||||||||||||||||| || || || || ||||| |||||||| || Sbjct 6 CTCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGG 65 Query 6447 GGGGAGGACATCCAGGTA-GTCTTCGGGGGGCGGGTCGGCATCGATGGTGAAGATGCCGG 6505 || ||| || || | |||| || || ||||| || || | ||| |||| |||| Sbjct 66 CGGTAGGGGGTCTAGCTGCGTCT-CGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGG 124 Query 6506 GTAGGAGGGTGGTGTTAAAGTAGGAGATGGAGGCGGGGTCTTGCAAG-----CGC-TGCT 6559 | || ||| | || |||||| || | |||||||| ||| |||| Sbjct 125 GCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATC---CTTGCAAGTCTAGCGCCTGCT 181 Query 6560 CCCAGGCGCGCATGGCGAGGGCCCGATCGAAGGGGTGCAGGGGGCGCCCGGCGGGGAAAG 6619 ||| ||||| ||| || || || ||| | |||| || ||| | || || | | Sbjct 182 GCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGG 241 Query 6620 GGTGGGTGAGGGCGCTGGCATACATGCCACAGATGTCGTAGACGTATATGGGTTCCTCCA 6679 |||||||||| ||| ||| |||||||| || |||||||| |||| | ||| || | Sbjct 242 GGTGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTG-AGGGGCTCTCTGA 300 Query 6680 GGACCCCCAGGTAAGAGGGGTAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCGT 6739 | | || || || | ||||| || | || ||||||||||||||||||||||| |||| Sbjct 301 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGT 360 Query 6740 AGAGCTCCATGGAGGGTGCGAGCAGGACGCTGCCGAGGTTGGCGCGGTTGGGTCGCTCGG 6799 | || || ||||| ||||| ||| || ||||||||| ||| ||| |||| | Sbjct 361 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTG 420 Query 6800 CCCGGTAGACCACCTGGCGGAAGATGGCGTGGGAGTTGGAGGAGATGGTGGGGCGTTGGA 6859 | ||| || | | ||| | ||||||||| || |||||||| || ||||| || || |||| Sbjct 421 CTCGGAAG-CTATCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGA 479 Query 6860 AGATGTTGAAGC 6871 ||| |||||||| Sbjct 480 AGACGTTGAAGC 491 >seq256110 Length=496 Score = 172 bits (190), Expect = 1e-38 Identities = 254/355 (72%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 10438 GGAGGGGGAAGGCCTGGCCCGGGTGGTGAGCGGGGG-TCCCGAGCGACACCCGCGCGTGC 10496 |||||| || |||||||| ||| | | ||||| ||| ||||| ||||| | |||| Sbjct 356 GGAGGGCGAGGGCCTGGCGCGGCTAG-GAGCGCCCTCTCCTGAGCGGCACCCAAGGGTGC 298 Query 10497 AGGTGAAGCGCGACGCGAGCGAGGCGTACGTGCCTCGGCAGAACGTGCTGCGCGATCACC 10556 || ||||||| || || | |||||||||||||| ||||||||| || | ||||| | | Sbjct 297 AGCTGAAGCGTGATACGCGTGAGGCGTACGTGCCGCGGCAGAACCTGTTTCGCGACCGCG 238 Query 10557 CGGGCACGGAGGGAGAGGAGATGCGCGACCTGCGTTACCGCGCGGGGCGCCACATGC-GC 10615 ||| |||| ||||||||||| || | | || ||| |||||| | ||| || Sbjct 237 AGGGAGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGC 178 Query 10616 GTGCCCAAAA-----ACCGGGTGCTGCGCGACGTGGACTTCGAGGCGGAGCCGCTGACGG 10670 || || || | ||| |||||||||| | |||||| ||| | || ||| || | Sbjct 177 ATGGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCG 118 Query 10671 GCATCAGCCCGGCGCGGGCCCACCTCGAGGCGGCCAACCTGGCCACGGCCTACGAGCAGA 10730 | || || || ||||| || ||| | | ||| ||| |||||| || || |||||||||| Sbjct 117 GGATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTGGTAACCGCATACGAGCAGA 58 Query 10731 CGGCGCGCGAGGAAGCCAACTTCCAAAAGACCTTCAACAATAACGTGCGCACGCT 10785 ||| | | |||| |||||| ||||| ||| ||||| ||||||| ||||| Sbjct 57 CGGTGAACCAGGAGATTAACTTCAAAAAG--CTTTAACAACCACGTGCGTACGCT 5 >seq213072 Length=511 Score = 154 bits (170), Expect = 4e-33 Identities = 209/286 (73%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 6039 TTCCGCGCTAAAGTTGTCTACTTCTATGTACGAGGAAGATTTGACCGTGTATTCACCGGT 6098 ||| ||||||| ||||| ||| | ||||||| ||||||| |||||||| | Sbjct 173 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGA-----TATTCACCTGG 227 Query 6099 -----GGCGATGCCTTTGAGGTACTTGTCTTCCATCTGGTCGGCGAAGACGGTGGTCTTG 6153 || ||||||||||||| | ||||||||||| | ||| | | | ||| Sbjct 228 CCCGCGGTGATGCCTTTGAGGGTGGCCGCATCCATCTGGTCAGAAAAG-CAATCTTTTTG 286 Query 6154 TTGTCCAGCTTGGTGGCGAAGGAGCCGTAGAGGGCATTGGAGAGGAGCTTGGCAATGCTG 6213 | ||| ||||||||||| || || ||||||||||| ||||| || | |||||| ||| | Sbjct 287 T-GTCAAGCTTGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGAG 345 Query 6214 CGGATGGTCTGGTTCTTGTCCCGGTCCGCCTGTTCCTTGGCGCGGATGTTGAGCTGGACA 6273 || | ||| ||||| ||| | || || || | |||||||| |||||| ||||| || Sbjct 346 CGCAGGGTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACG 404 Query 6274 TACTCGCGGGCCACGCAGCGCCACTCGGGGAACACGGTGGTGCGCT 6319 || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 405 TATTCGCGCGCAACGCACCGCCATTC-GGGAAGACGGTGGTGCGCT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121094226934090