Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq198807 179 3e-40 seq5983 179 3e-40 seq4474 163 2e-35 >seq198807 Length=933 Score = 179 bits (198), Expect = 3e-40 Identities = 137/162 (85%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| |||||| Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| || | ||| || |||||||| || ||||| |||||||| Sbjct 743 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 802 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| ||||| |||| ||| ||||||||||| ||||||||| Sbjct 803 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATG 844 >seq5983 Length=3405033 Score = 179 bits (198), Expect = 3e-40 Identities = 137/162 (85%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| |||||| Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| || | ||| || |||||||| || ||||| |||||||| Sbjct 1577616 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 1577557 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| ||||| |||| ||| ||||||||||| ||||||||| Sbjct 1577556 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATG 1577515 Score = 141 bits (156), Expect = 8e-29 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| || |||||||| ||||| |||| | || |||| Sbjct 1576430 AAGTGCCTCCACTGGAAGCCGTACACGGGGCCCAGGTCGCCCTCCTCCCGCTCCTTGAAG 1576371 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | || |||| || || | |||||||||||||||||||||||| || |||||||| Sbjct 1576370 CCGTTTTTATCCAGGAACTCCCGGGAACCGTTGGCGTCCCAGATCTTCACGCCCTTCTCA 1576311 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| ||||| || ||||| || Sbjct 1576310 GACAGCTCCTTGGAATTCGTGGAACC 1576285 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 || ||||||||||||| |||| ||||||||| | ||| || |||||| | || ||| || Sbjct 1577112 CTCTGGGGTTCCAGGCGCACATGATGATGCGGCGGTCCTCCGGGTTGCTTCTTATGGTGT 1577053 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 ||||| | || |||||||| ||||| ||| | ||||||||||||| Sbjct 1577052 CCACGACCTTCTGCAGCTGGTCCACGCCCTTACCCGAGTAGTCTG 1577008 >seq4474 Length=502254 Score = 163 bits (180), Expect = 2e-35 Identities = 372/553 (67%), Gaps = 10/553 (2%) Strand=Plus/Minus Query 113975 CTCTCGTAGACTTTAAACTCGTACCGTATTCCGTTCTCCTCCTGAGTCTCAACGGGAACG 114034 |||| ||| || | ||| |||| | || |||||||||||||| ||| | || Sbjct 9417 CTCTGGTACACCTGGAACCGGTACTGGATGCCGTTCTCCTCCTGCAGCTCCGACGACACC 9358 Query 114035 CCTGGAAACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCG 114094 || ||| |||||||||| || || | | | || | || |||| || |||| Sbjct 9357 CCAGGATACTCTGGCAGCAGCCGGAACTGGGCCGGGCTGATGTCAGGGAAGAACGTGTCA 9298 Query 114095 CACGCAAATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATG 114154 | || || ||| | | | ||||| |||| |||| | | |||| ||||||| Sbjct 9297 CTCGGGAACTGCTTTAGGATCCGCGTGACGAACAACCTCCGGGGGCACGGGGTCTCCATC 9238 Query 114155 AGCTCCCCGTAGAGAGAGCTACCTCCAATCACCCAGATCTGGTCGGCGA-CATCGGCGAG 114213 | |||| ||| | |||||| || ||||||| ||| | |||||| || | || | Sbjct 9237 ACCTCCGAGTACATAGAGCTGCCGCCAATCAACCACACCTGGTCTGCCAGCAGACCCTCC 9178 Query 114214 AGTTGTCGTCGCT-AGCTCTACGGCAGAGCTAAAGTCGGACGCCAGGTGATGAGCTCCAG 114272 | | |||| || | ||||||| | ||| |||||||| |||||||||| Sbjct 9177 GG--GCCGTCCAGGAGGCGGAGGGCAGAGGGCAGGTCCCGGGCCAGGTGGTGAGCTCCAG 9120 Query 114273 ACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTAT 114332 |||| || | | |||| || || || || | ||||| ||||| | || |||| | Sbjct 9119 ACGGCGGGGCCTCCAGCTGCCGACTCAGAACGATGTTTATTCTGTCGTTAAGCGGTCGGT 9060 Query 114333 TCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT-ACCT 114391 |||| || ||||||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 9059 TCTTCTCCGGGATGGAGTTCCAAGTCTTTCGGCCCATGATGACCACGTTCTGCTTGTCCT 9000 Query 114392 CTG--TCGGAAG---ACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTC 114446 | | | | || ||| | ||||| || || ||||| || || ||| |||| Sbjct 8999 CCGCACCAGGAGTCCTCGTTACCGTCAACCGGCGGAAATGTTTGAACTCGTTGTTGAGTC 8940 Query 114447 TCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCTGCCA 114506 | || |||||||| |||||||| || | ||||||||| ||| |||||| | |||| Sbjct 8939 TAGTGGGGTGCCACGGGAGATCTCCTTTATAGCCGATGCCCCCGTCCGGACACACGGCCA 8880 Query 114507 CGATACCGTTCAG 114519 |||||| ||| || Sbjct 8879 CGATACAGTTTAG 8867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404047387623322