Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq198807 170 1e-37 seq5983 170 1e-37 seq1826 84.2 2e-11 >seq198807 Length=933 Score = 170 bits (188), Expect = 1e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 683 AGGCCGGTGACGTGGGCAATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 742 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| || | ||| || ||||| || || ||||| || |||||| Sbjct 743 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 802 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| ||||| || | ||||||||||||||| || |||||| | ||||||| Sbjct 803 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 856 >seq5983 Length=3405033 Score = 170 bits (188), Expect = 1e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||||||| || |||||||| || ||||| | ||||||||||||||| ||||| Sbjct 1577676 AGGCCGGTGACGTGGGCGATCATGTAGGTCAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 1577617 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| || | ||| || ||||| || || ||||| || |||||| Sbjct 1577616 ACGCCCAGGCCCATGTCCCCGGAGCGCTGATACAGCTGGCAGGACAGCTCGCCGTCGCTT 1577557 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| ||||| || | ||||||||||||||| || |||||| | ||||||| Sbjct 1577556 ACGTAGAACTGGCACAGGGCGTGGCACGGAGGCAGGGCCATGTTGTGCAAGTCT 1577503 Score = 159 bits (176), Expect = 3e-34 Identities = 136/168 (81%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||| || ||||| || |||||||| ||||| |||||||| || |||||||| Sbjct 1576452 CATGTCTGTGTATTCGGCTCCAAAGTGCCTCCACTGGAAGCCGTACACGGGGCCCAGGTC 1576393 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| |||| | || |||||| | || |||| || || | ||||||||||||||| Sbjct 1576392 GCCCTCCTCCCGCTCCTTGAAGCCGTTTTTATCCAGGAACTCCCGGGAACCGTTGGCGTC 1576333 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || |||||||| || ||||| ||||| || ||||| || Sbjct 1576332 CCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGAATTCGTGGAACC 1576285 Score = 107 bits (118), Expect = 1e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 || |||||||||||||||||| ||||||||| | ||| || |||||| | || ||| || Sbjct 1577112 CTCTGGGGTTCCAGGCGCACATGATGATGCGGCGGTCCTCCGGGTTGCTTCTTATGGTGT 1577053 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||||| | || |||||||| ||||| ||| | |||||||||||| Sbjct 1577052 CCACGACCTTCTGCAGCTGGTCCACGCCCTTACCCGAGTAGTCT 1577009 >seq1826 Length=512219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/132 (75%), Gaps = 9/132 (7%) Strand=Plus/Minus Query 64860 GGGAACGTGGCCTGGATGCACCTCTTGGCTGCCAGGGTCCTGCTGGCCGGGGGAGAGAGC 64919 || |||||||||||||||||||| |||| || ||| |||| ||| || |||| Sbjct 209868 GGCAACGTGGCCTGGATGCACCTGCTGGCGGCACGGGGCCTGATGG-------AG-GAGC 209817 Query 64920 GCCCACAAGGTCAACGGGGAGGCCTTCTTTTGCTACGACGACTCTCCATACATGAGCTAC 64979 | || | ||| ||| |||| | ||| |||||||||||||| || |||| ||||||| Sbjct 209816 -CGCAGACGGTGGGCGGCCAGGCGTACTTCTGCTACGACGACTCGCCCTACAAGAGCTAC 209758 Query 64980 GACGCCTTCAAC 64991 || | ||||||| Sbjct 209757 GAGGACTTCAAC 209746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367582338498437