Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_031948.1 Length=31481 Score E Sequences producing significant alignments: (Bits) Value seq213072 145 2e-30 seq272266 116 7e-22 >seq213072 Length=511 Score = 145 bits (160), Expect = 2e-30 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 5630 TCAATTTGGTCAGAAAATACAGtttttttGTTGTCTAACTTCGTGGCAAACGACCCATAG 5689 || || ||||||||||| || | ||||||| ||| | ||| |||||||||||||| ||| Sbjct 258 TCCATCTGGTCAGAAAAG-CAATCTTTTTGT-GTCAAGCTTGGTGGCAAACGACCCGTAG 315 Query 5690 AGGGCGTTGGAGAGTAGCTTGGCAATGCTGCGCATGGTTTGGTTCTTGCTTTTATCTGCC 5749 ||||||||||| || | |||||| ||| ||||| ||||||||| |||| ||| || Sbjct 316 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTTGC-GCGATCGGCG 374 Query 5750 AGCTCTTTGGCCTGAATGTTAAGTTGCACATATTCTCTAGCAAGACATTTCCACTCTGGG 5809 |||| |||||| ||||| || ||||| ||||| | |||| || ||| || ||| Sbjct 375 CGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTC-GGG 433 Query 5810 AATATGGTGGCTCTCTCATCGGGGACAAGGCGGACGGTCCAACCTCTGTTATGTAAAGTG 5869 || | ||||| | ||| ||||| || ||| | ||| |||||| | ||| || | ||| Sbjct 434 AAGACGGTGGTGCGCTCGTCGGGCACCAGGTGCACGCGCCAACCGCGGTTGTGCAGGGTG 493 Query 5870 A 5870 | Sbjct 494 A 494 >seq272266 Length=497 Score = 116 bits (128), Expect = 7e-22 Identities = 323/489 (66%), Gaps = 11/489 (2%) Strand=Plus/Plus Query 5894 TCTCCTCGCAATGGCTCATTGGTCCAACAGAGCCGCCCGCCTTTGCGTGAGCAGAATGGG 5953 ||||| || | |||| |||||||| ||||| || ||||| ||||| ||||||||||| Sbjct 7 TCTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGC 66 Query 5954 GGAAGCACATCCAAGTACTCATCCGCgggggggTCTGCATCGATGGTCAAGATGCCCGGG 6013 || || || | | | || | ||||||||||| || | ||| |||| || || Sbjct 67 GGTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGC 126 Query 6014 AGCAGCTCTGGGTCAAAATAGCTGATGGTTTTCTGGCTTTGCATCTTTA----CTTC-GT 6068 ||||| | ||| || ||| || || | ||||| | || || | | Sbjct 127 AGCAGGCGCGCGTCGAAGTAGTCTATC---TTGCATCCTTGCAAGTCTAGCGCCTGCTGC 183 Query 6069 AACAC-CTGACAGCCAGGGCCCGCTCGTAAGGATTAAGAGGCGGGCCGGCGGGAAAAGGA 6127 | | | | | || || || |||||||| || || || || || || || | || Sbjct 184 CATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGG 243 Query 6128 TGGGTGAGGGCGCTAGCATACATGCCACATATGTCATACACGTACACAGGTTGCTTTAAA 6187 |||||||| ||| || |||||||| || ||||| || |||| | || | | | Sbjct 244 TGGGTGAGCGCGGAGGCGTACATGCCGCAAATGTCGTAAACGTG-AGGGGCTCTCTGAGT 302 Query 6188 ATGCCTATGTAAGTGGGGTAACACCTTCCCCCTCTGATGCTGGCGCGAACATACTCATAC 6247 || || | || || ||||| || ||||| || | |||||||||||| || || || || Sbjct 303 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 362 Query 6248 ATCTCATTAGAGGGTGCCAGCACAGTGGTGCCCATGTGGGGCTGGTCGGGCTTTTCTGCT 6307 | || | ||||| || || | || || | || | || |||||| |||||| Sbjct 363 AGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCT 422 Query 6308 CTGTAGAGAATTTGTTTAAAAATAGCATGGGAGTTGGAACTTATAGTGGGACGCTGGAAG 6367 | | || | | || | || || ||||| |||||||| ||| || |||||||||||| Sbjct 423 CGGAAGCTA-TCTGCCTGAAGATGGCATGTGAGTTGGATGATATGGTTGGACGCTGGAAG 481 Query 6368 ACATTGAAG 6376 || |||||| Sbjct 482 ACGTTGAAG 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100106895687882