Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4690 196 7e-45 seq3090 140 5e-28 >seq4690 Length=434716 Score = 196 bits (216), Expect = 7e-45 Identities = 208/271 (77%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 8280 CGGGAACTCGGAACGCGGCCAACGGACAC--CCCTTG-ACGTTGCTACAGACTAGAGACT 8336 ||||| | ||||| | ||||| |||||| ||| | |||||| | ||||| || || Sbjct 387627 CGGGATC-CGGAAGGAGGCCAGAGGACACGGCCCGCGCACGTTGTTGCAGACCAGCCTCT 387685 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | | ||||| ||||||||| |||| ||| | |||||||||||||||||||||| Sbjct 387686 GCAGGGAGGCGCTGTTGACGATCTCGAAGCCCGCAGTGCCGCCGAAGGTGCTGGGCTTCC 387745 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| |||| |||||||| |||| ||| |||||| ||||| ||| |||| ||||||| Sbjct 387746 AGTACTCCGGAGAGCAGATTGGGTTCCCCAGGAGGCCCTTGAGAGAGTACGGGGCCCCCA 387805 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||| |||| ||||||||||||||||| | |||||| ||||| | | || | Sbjct 387806 TCTCCACCATGGTCTCCCCGAAGATGGCGTTGGGCCTGGGCTTCTCCACGAGAAGGCCTG 387865 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 ||| |||||||| || || |||| ||| || Sbjct 387866 GGTAGAGCTCCACGGCGTCCACGTGTCCATA 387896 Score = 116 bits (128), Expect = 5e-21 Identities = 178/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || ||||||||||| || ||||||| ||| || || || Sbjct 389252 TCACCGATCAGGATGAGCCGCGTGGTCTGGAAGAGCCGCTCGTCGTCCCAGTCCGGGTGC 389311 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | |||| || |||||||| | |||||| || | ||||||| ||||||||||| Sbjct 389312 ACGCCCCTCAGGACGTCGCACACGCGGTTGTGCTCGCGCAGCCAGAGGGTGGCGTACATG 389371 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || |||||||| || ||||| || || ||||||| ||| | ||||| Sbjct 389372 ATGAGGCCGGGGACCAGGCCGAAGGCCTCGTGGCCCACAGCCAAGCGCTGCTCCTCGGGA 389431 Query 9412 ACTTCGGGAGGATAGATCATGT--GCACCTGGAC-GTCTTTGACCGAGGGGGGATACATT 9468 || | || || ||| ||| | || || || | | |||| ||||| ||||| Sbjct 389432 ACGTGAGGGGGGTAGTGCATCTCCGCGCCCACACTGGC---CACCGTCGGGGGGTACATG 389488 Query 9469 TCACCGTCAAT 9479 || |||||||| Sbjct 389489 TCTCCGTCAAT 389499 >seq3090 Length=57297 Score = 140 bits (154), Expect = 5e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| ||| | | || ||||| ||||| |||||||||||| |||| ||| Sbjct 18460 TTAACGATGTCGAAGCCCGCCGCGCCCCCGAACGTGCTCGGCTTCCAGTACACCGGCGAG 18519 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| ||| ||| || |||||||||||||| ||||||| ||| | |||||| Sbjct 18520 CAGATGGGGTTCCCCAGGAGACCCTTGAGGGAGAACGGGGCCCCCATCTCCACCATGCTC 18579 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || |||||||||||| || || | | |||| || | || | ||| | ||||| Sbjct 18580 TCGCCGAAGATGGCGCTGTCGCGCGTCCGCTCCAGCAGCAGGCCCGGGTAGAACTCCAGC 18639 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 || |||| ||| ||||| || Sbjct 18640 GCGTCGATGTCCCCGTACAG 18659 Score = 111 bits (122), Expect = 2e-19 Identities = 178/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| |||||||||| ||||||||||| || |||||||| | ||| || || | Sbjct 22737 CCGATGATGATGAGTCTGGTGGTCTGGAAGAGCTGCTCGTCTCCCCAGGTGGGGTGCACC 22796 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||| || || ||||||| |||||| |||| ||||| | ||||| ||||| || Sbjct 22797 TCCTTCAGCACGTCACACACCCGGTTGTGCTCCCGCAGCCACAGAGTGGAGTACAGGGTG 22856 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCA-- 9412 || || || | |||||| || | || || || | ||||| ||| | | ||||| Sbjct 22857 AGGCCGGGCAGCAGGCCGAACACTTCCTGGCCCAGGGCCAGGCGCTGGCTGGGGGGCACG 22916 Query 9413 CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCAC 9472 || | | || ||| ||||| |||| |||| || | | | |||||| |||| || | Sbjct 22917 CTACTG--GGGTAGCTCATGGCCACCGGGACCTCCTGGGTGGTCGGGGGAAACATCTCCC 22974 Query 9473 CGTCAATCATCTGA 9486 | | |||| |||| Sbjct 22975 CATAGATCAACTGA 22988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713046643750080