Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq742 158 3e-33 >seq742 Length=2242023 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| |||||||| || || Sbjct 1678282 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCTAGCG 1678339 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| ||||| || || |||| Sbjct 1678340 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGC 1678399 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 1678400 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 1678459 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || |||||||| Sbjct 1678460 TCCAGAAAGAATCCACCCTTCATCTTGT 1678487 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| |||||||| || ||| Sbjct 1675062 CAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTGGA--GCCCAGTG 1675119 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || || ||| ||||| |||||||| ||||| || || || || |||| Sbjct 1675120 ACACCATAGAAAATGTTAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 1675179 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || | || || ||| Sbjct 1675180 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1675239 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || |||||||| Sbjct 1675240 TCCAGAAAGAATCCACCCTCCATCTTGT 1675267 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| || ||||| |||||||| ||||| ||||| || || ||| Sbjct 1667450 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1667509 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||||||||| || ||||| |||||||| | || || | || || ||| Sbjct 1667510 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1667569 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || |||||||| Sbjct 1667570 ATCCAGAAAGAATCGACCCTCCATCTTGT 1667598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1197139076299838