Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq742 143 2e-29 >seq742 Length=2242023 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| || ||||| ||||| |||||||| ||||||||| Sbjct 1678496 AGACGCAGGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 1678437 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||| | || ||| Sbjct 1678436 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCC 1678377 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 1678376 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTG 1678317 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 1678316 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 1678278 Score = 129 bits (142), Expect = 5e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| || ||||| ||||| ||||| || ||||||||| Sbjct 1675276 AGACGAAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1675217 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||||| || ||| Sbjct 1675216 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 1675157 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | ||||| || | ||||||||| | || Sbjct 1675156 TTGTCC-TGGATCTTAGCTTTAACATTTTCTATGGTGTCACTGGGCTCCACCTCAAGGGT 1675098 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || || || || ||||||||| Sbjct 1675097 GATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATG 1675058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||| || ||||||||| Sbjct 1667607 AGACGAAGGACAAGATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1667548 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| || || | ||| | || ||| Sbjct 1667547 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCC 1667488 Query 41765 TTGTCCATGATTTTTTGCTTCA 41786 |||||| ||| || ||||| Sbjct 1667487 TTGTCCTGGATCTTGGCCTTCA 1667466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459833984852400