Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq14194 93.3 4e-14 seq14193 93.3 4e-14 >seq14194 Length=7087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || |||| ||||||||| |||| |||| Sbjct 3495 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCT 3554 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| || || || ||||| || ||||| ||||| || ||||| |||| Sbjct 3555 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGG 3605 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || | |||||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 3914 ATGTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGG 3973 Query 17294 AATCCGTAAAAGCATCGGGCTTCCG 17318 || || || || |||| ||| |||| Sbjct 3974 AAACCATAGAAACATCTGGCCTCCG 3998 >seq14193 Length=36040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || |||| ||||||||| |||| |||| Sbjct 33180 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCT 33121 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| || || || ||||| || ||||| ||||| || ||||| |||| Sbjct 33120 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGG 33070 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || | |||||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 32761 ATGTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGG 32702 Query 17294 AATCCGTAAAAGCATCGGGCTTCCG 17318 || || || || |||| ||| |||| Sbjct 32701 AAACCATAGAAACATCTGGCCTCCG 32677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517435899740760