Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq14194 82.4 8e-11 seq14193 82.4 8e-11 >seq14194 Length=7087 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272 |||||| | ||| ||||||||||||| || |||||||| ||||| | || ||||| Sbjct 3485 GCAATGATGACCT-CGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAG 3543 Query 16273 TCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 |||| ||||| | |||||| || ||||| || || || || ||||| || ||||| || Sbjct 3544 GCCTCTCTTCTTCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCAC 3603 >seq14193 Length=36040 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272 |||||| | ||| ||||||||||||| || |||||||| ||||| | || ||||| Sbjct 33190 GCAATGATGACCT-CGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAG 33132 Query 16273 TCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 |||| ||||| | |||||| || ||||| || || || || ||||| || ||||| || Sbjct 33131 GCCTCTCTTCTTCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCAC 33072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511305999325240