Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3008 379 2e-100 seq2247 96.9 4e-15 seq594 96.9 4e-15 >seq3008 Length=76608 Score = 379 bits (420), Expect = 2e-100 Identities = 1052/1608 (65%), Gaps = 9/1608 (1%) Strand=Plus/Plus Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || || || || |||||||| | || |||| || | ||| |||||||||| | | || Sbjct 40306 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTC 40365 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 || || ||||| |||| || || || ||| | ||| || || ||||| || || Sbjct 40366 AGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAG 40425 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| || || || || || || | || | | | || || |||| || || || | Sbjct 40426 CCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACC 40485 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||| | || || || || || || || | |||| |||| ||||||||| ||| | Sbjct 40486 GGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCT 40545 Query 53657 TTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAATGCAATAGAT 53713 ||||| ||| ||||| || | | || ||||||| | || | || Sbjct 40546 GCGAGTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCGAG 40605 Query 53714 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 ||||| || || ||||| ||||| | | || | |||| | || || ||||| | Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTG--TATTCGACGATTTCCGTGCAGA 40663 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 | || || |||||||||| || | ||| || || || ||||| |||| || || || | Sbjct 40664 GGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTT 40723 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 | || || ||| ||||||| || ||||| ||||||| || || || || | ||| | Sbjct 40724 TGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCT 40783 Query 53892 CACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 53951 | | ||| | | ||| ||| || | ||||| || || | || Sbjct 40784 GCTGGGACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTT 40843 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 ||||||| || ||||| | ||||| || || || || | |||||||| | |||| Sbjct 40844 CAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACC 40903 Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAAT 54070 | || || || ||| || ||||| || || || || ||||| | || || ||| Sbjct 40904 AGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA- 40962 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 || || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 40963 AGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAAC 41022 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||| | ||||| || |||| ||| |||| | | | || || | ||||| || ||| Sbjct 41023 ACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCC 41082 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | ||| | || ||||| || ||||| || | ||| || | | || ||||| Sbjct 41083 TGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAG 41142 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 54310 || ||||| |||| ||| ||||| || | | || || || | | | || Sbjct 41143 TTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCCG 41202 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 |||||||| || ||| ||||| | ||||| | || || || || ||||||||||| Sbjct 41203 ATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTCG 41262 Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 54430 || || || ||| ||||| || || || ||||| |||| || | | | || ||| Sbjct 41263 ATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCCC 41322 Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 || || || | ||| || || ||||| || ||||| | || || || || ||||||||| Sbjct 41323 GCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACGTC 41382 Query 54491 TCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 54550 ||||| || | ||| || ||| || || || || || | || ||||| | ||||||| Sbjct 41383 TCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTGC 41442 Query 54551 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTA 54610 || || | || | | ||| ||| || |||| || ||||||| |||| || || Sbjct 41443 TGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTTG 41502 Query 54611 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCC 54670 || || || ||||||| || || ||||| ||| |||| || | |||||||| || Sbjct 41503 AAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCT 41562 Query 54671 TTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTT 54730 || | | | ||| | | | || | || || || || || || | || Sbjct 41563 TTGTTGTCTTGAACAAGCTTGAGCGTGTTCTCGGAGATCATGGGGGAGTGGCGTCTGTTC 41622 Query 54731 TTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCT 54790 || ||||| ||||| | | |||| |||||| || || || | || || || ||| Sbjct 41623 AGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTCT 41682 Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 54850 ||||| | || || ||||| || | || || || ||||| || || || |||| || Sbjct 41683 TTGTGCAAGTTGGAGACGGCGATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGTC 41742 Query 54851 GTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910 || ||||| || || || || | || ||||| | || ||||| || || || | Sbjct 41743 GTGAGGGTGGCGGCGATCTCCGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCTG 41802 Query 54911 TATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAG 54970 || | || ||||| |||||||| | || | ||||| | | |||| ||| | Sbjct 41803 TACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAGT 41862 Query 54971 CCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 55018 || || || | || || || || ||||| || |||||||||||| Sbjct 41863 CCGTAGCACAGCTTCTGGATGCGCGACGTGATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | ||||| || || || ||||| ||||| ||||| || || |||||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 24277 C 24277 | Sbjct 52824 C 52824 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 52876 CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 52935 ||| || || || ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 52936 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 52995 | || || || || |||||| |||| || | ||||| ||||| || | || ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 52996 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 53031 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || |||||||| || ||||| || |||||||| | || || || | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 || || || ||||||| || || ||||| || | || |||| ||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || |||||| | || | || ||||| |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| || || ||||| ||||| | || | || |||||||||| ||| Sbjct 30266 CTCCACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCT 30325 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||| || | || | ||| | | | ||| || ||||| Sbjct 30326 CTGCTCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCA 30385 Query 54145 CGGTTCCAAGTA 54156 |||||||||||| Sbjct 30386 CGGTTCCAAGTA 30397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593595753285360