Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq9580 188 8e-43 >seq9580 Length=8214 Score = 188 bits (208), Expect = 8e-43 Identities = 148/177 (84%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| ||||||| ||| |||| ||||||||| ||||| | ||||||||| || |||||||| Sbjct 6628 GAGTCCCGTGATGTGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGG 6687 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 |||||| || |||||||| |||||||||||||||||||| || || ||||| ||| | Sbjct 6688 CACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCA 6747 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 |||||||||||| |||||| ||||||||| ||||| |||||| ||| ||||| || Sbjct 6748 CACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGCGCCATGAGGGGGAGGTCTGC 6804 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| |||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct 7273 GTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTCGCCCTCCTC 7332 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 || | | |||| | | ||||||||||| ||||||||||| ||||| ||||| Sbjct 7333 TCTCTCGGAGAACCCGAGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTCCCAAATCTT 7392 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 || || || | |||||||| |||| | ||| || ||| Sbjct 7393 CACCCCTTTCTCCGAGAGCTCCTTGGCATTCGTCGATCCC 7432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589951725846280