Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq7690 122 1e-22 seq6130 86.0 8e-12 >seq7690 Length=418670 Score = 122 bits (134), Expect = 1e-22 Identities = 185/256 (72%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| ||||||||| | |||||| || |||| ||||| | Sbjct 284536 GAACTTCTCAAAGTTCCAGGACACGTCGTTCCTGCACACCGGGCTCCAGAGGATGAGTTT 284595 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 ||||||| ||| || | || |||||||| || ||||| | || | | ||| Sbjct 284596 GGGGTCGTTCATCAGGGCGCCGGGCTCGTCGCTGGGGTATGGCAG--CTTCCCCTTCAGG 284653 Query 83261 AAGGCGAAGAGCGGATGTGCC-CTTGCACCGTTGACCTCGCACTT-CTCGAAGAGCATAA 83318 || | || || || || || ||| | ||||| || || ||||| ||| |||||| || Sbjct 284654 AACACAAACAGGGGGTGGGCATCTTTC-CCGTTCACATC-CACTTTCTCCAAGAGCTGAA 284711 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | |||||||| ||||| || ||||||||||||| ||||||||| | | || || | | Sbjct 284712 ACTTCGGCTCAAAGCCATTTCCAGGACGGACGTACTTCAGGGACAGGAGAATTTCCTCGT 284771 Query 83379 TCTGGGCGTTTTCCTG 83394 ||| | ||| ||||| Sbjct 284772 TCTTGCAGTTCTCCTG 284787 >seq6130 Length=22736 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCC-CGAGCTCCTAGG 83449 |||| || ||||||||||| || || | || || | || || ||| || | ||| Sbjct 4480 CCTGATGTCCGAACTGGTTGCAGGGCACACCCAGGATGACGAGGCCCTCGGTCGAGTAG- 4422 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 || | ||||||||||||||||||||||| |||| | || | |||||||||||||| Sbjct 4421 CGACTGTGCAGCTCGTTCATCTGAGTGTAGTCCCTGGTGGTCGTTCCTCAGAGGGACGCC 4362 Query 83510 ACGTTCTCGATGAG 83523 |||||||| ||||| Sbjct 4361 ACGTTCTCAATGAG 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608667757908280