Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq562 113 4e-20 >seq562 Length=198046 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| ||||| | ||||| || | || Sbjct 185759 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185818 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||| || Sbjct 185819 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185878 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| || | ||| |||||| Sbjct 185879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 185938 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | ||||| ||||| || ||||| || Sbjct 185939 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 185973 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| ||||| | ||||| || | || Sbjct 188461 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188520 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 188521 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188580 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 188581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188640 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 188641 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 189373 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189432 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 189433 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189492 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| || | ||| |||||| Sbjct 189493 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 189552 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | ||||| ||||| || ||||| || Sbjct 189553 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 189587 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 185531 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185590 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 185591 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 185650 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 185651 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185710 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 185711 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 188917 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188976 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 188977 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189036 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 189037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189096 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 189097 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 189145 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189204 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 189205 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189264 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 189265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189324 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 189325 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 188689 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188748 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||| || Sbjct 188749 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188808 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 188809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188868 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 188869 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| || || | ||||| || | || Sbjct 185303 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATCT 185362 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||| || Sbjct 185363 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185422 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||||| |||| || |||||| Sbjct 185423 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185482 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 185483 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 185514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422171934462212