Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq562 165 8e-36 seq14194 131 2e-25 seq14193 131 2e-25 seq2247 100 3e-16 >seq562 Length=198046 Score = 165 bits (182), Expect = 8e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| ||||| ||||||||| | || ||||| | Sbjct 185974 AAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 185915 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| || || | || || || || |||||| | | Sbjct 185914 CAGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAG 185856 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 185855 ATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 185796 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 185795 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGGC 185743 Score = 161 bits (178), Expect = 1e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| ||||| ||||||||| | || ||||| | Sbjct 189588 AAATATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 189529 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| || || | || || || ||||||||| | | Sbjct 189528 CAGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAG 189470 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 189469 ATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 189410 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 189409 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189357 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 188672 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188613 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 188612 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 188554 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 188553 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188494 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 188493 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 188446 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 188840 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 188782 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 188781 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188722 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 188721 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188673 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 185682 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 185624 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 185623 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 185564 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 185563 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 185515 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 189068 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 189010 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 189009 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188950 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 188949 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188901 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||||||| | || || Sbjct 189296 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 189238 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 189237 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 189178 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 189177 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189129 Score = 143 bits (158), Expect = 3e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 185514 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185455 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || || |||||| | || || Sbjct 185454 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCA 185396 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||| ||||| Sbjct 185395 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAATACAA 185336 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||||||||| |||| || ||||| ||| |||| ||||| Sbjct 185335 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGG 185293 >seq14194 Length=7087 Score = 131 bits (144), Expect = 2e-25 Identities = 118/147 (80%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| ||||||||||||| ||||| |||||| ||||||| || || ||||| Sbjct 3630 GGAGAACGCGTGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCT 3571 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct 3570 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACTTTCTCCAACGAGCTG 3511 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGC 117178 ||| ||| ||||| |||| |||||| Sbjct 3510 ATCAGCAGAGACGA-GGTCATCATTGC 3485 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| |||| ||| | ||||| Sbjct 4257 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGAAGAGCGGTTC 4199 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 4198 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACTTG 4139 Query 116804 GTCGAGC 116810 || |||| Sbjct 4138 GT-GAGC 4133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | |||||||||||||| | ||||| | || ||||| || || || Sbjct 4030 GGTGGAGCGCTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGATGTTTCTATGGTTTCCA 3971 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||| |||| ||| Sbjct 3970 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTAC 3916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| || ||||| ||||| || || || |||||||| | |||| ||| Sbjct 4443 GAGCCTCTACTGAAGGACAACCCTCGCCGCTTTGTCATCTTCCCCATCAAGTACCACGAC 4384 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||| | |||||||| Sbjct 4383 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCAGAGGAGGT 4331 >seq14193 Length=36040 Score = 131 bits (144), Expect = 2e-25 Identities = 118/147 (80%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| ||||||||||||| ||||| |||||| ||||||| || || ||||| Sbjct 33045 GGAGAACGCGTGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCT 33104 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct 33105 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACTTTCTCCAACGAGCTG 33164 Query 117152 ATCTCCAGGGACGAGGGTCTGCATTGC 117178 ||| ||| ||||| |||| |||||| Sbjct 33165 ATCAGCAGAGACGA-GGTCATCATTGC 33190 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| |||| ||| | ||||| Sbjct 32418 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGAAGAGCGGTTC 32476 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 32477 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACTTG 32536 Query 116804 GTCGAGC 116810 || |||| Sbjct 32537 GT-GAGC 32542 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| || ||||| ||||| || || || |||||||| | |||| ||| Sbjct 32232 GAGCCTCTACTGAAGGACAACCCTCGCCGCTTTGTCATCTTCCCCATCAAGTACCACGAC 32291 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||| | |||||||| Sbjct 32292 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCAGAGGAGGT 32344 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | |||||||||||||| | ||||| | || ||||| || || || Sbjct 32645 GGTGGAGCGCTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGATGTTTCTATGGTTTCCA 32704 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||| |||| ||| Sbjct 32705 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTAC 32759 >seq2247 Length=89140 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | |||||||| | |||||||| || ||||| ||| Sbjct 51429 GAACCTCTGCTCCGAGAGAACCCCAGACGGTTCGTCGTCTTCCCCATCCAGTACCCCGAC 51488 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| |||||||| |||| | || ||||||||||| || |||||||||| Sbjct 51489 ATCTGGAAGATGTACAAGCAGGCACAAGCCTCGTTCTGGACGGTGGAGGAGGTGG 51543 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 117026 GCCTTCGGCG-AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAG 117084 ||| || ||| |||| | |||||||| ||||| || ||||| ||||||| || ||| Sbjct 52802 GCCCTCAGCGGAGCGGATTGTGGCCTTTGCGGCGGTGGAGGGAATCTTCTTCTCTGGCTC 52861 Query 117085 TTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144 |||||| |||| | |||||||||||| | || | ||||||||||| || | | ||| Sbjct 52862 TTTCGCTTCCATCTATTGGCTCAAGAAGAGAGGGTTGATGCCCGGCCTTACCTACTCCAA 52921 Query 117145 CGAGCTCATCTCCAGGGACGAGG 117167 |||||| || ||| ||||||| Sbjct 52922 CGAGCTGATTAGCAGAGACGAGG 52944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515109992850320