Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3008 152 4e-32 >seq3008 Length=76608 Score = 152 bits (168), Expect = 4e-32 Identities = 506/775 (65%), Gaps = 24/775 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | || ||||| |||| ||| || | | | || | Sbjct 40016 CTTTGAGCAGATGGGGGTTGACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGA 40075 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | || |||| || ||||||||||| || ||||| || || | |||| Sbjct 40076 TGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 40135 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| ||||| || || ||| || ||||||| |||| || || || || Sbjct 40136 TGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 40195 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 | ||||||| ||| | | ||| || |||| || || | ||| Sbjct 40196 GCAGGCCCCAGTCCAGCAGGTCGGTGG----------GC--TTCT--TC-TCCCACATGT 40240 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || |||| ||| || || | | ||| ||||| || ||||| ||| Sbjct 40241 CGTACTGCAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGAGCT 40300 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAA 133565 ||||||||||||||| ||||||| ||||| |||| | ||| || ||| || Sbjct 40301 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCG 40360 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 | ||| | | | ||| || ||| ||| ||| | | | | || | || | || |||| Sbjct 40361 T-GTTCA-GCAGCTGAGCTTCGGGGCTCTCGAACGGG-TAACGCATGAGGATGAAGGCGT 40417 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 ||||||| || || | ||||| || || || || || | ||| | | || | || Sbjct 40418 CGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCT 40477 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 ||| | |||||| ||||| ||||||||||||||| | || |||||| | ||| | Sbjct 40478 CGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGG 40537 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | || | ||||||| |||| || ||| | |||| || |||||| Sbjct 40538 TCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCT--GC-TCGGGGGTGACGTACATGTTGA 40594 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCT 133863 || | ||| || || || ||||| ||||| | | | || | |||||| | Sbjct 40595 GCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTT 40654 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||||||||||||| | ||||||||||||| ||| | || ||||| | |||| Sbjct 40655 CCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGC 40714 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 | || ||||| |||||||| ||| |||||||||| | || ||||| ||| Sbjct 40715 AGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGAT 40769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433740743118244