Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1046 98.7 2e-15 >seq1046 Length=17845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || || || || || || || |||| ||||| ||||||| Sbjct 6439 GAGCTCTGTGGTGGTATTTCATCTCTAAGGGCATTGAGTATCTGGACACGGTGTTTTTCA 6380 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||||| ||| | || || || || || | || |||| Sbjct 6379 TCCTGAGGAAAAAATTCAACCAGGTTACTTTCTTGCATGTCTACCACCACTGCACCATGT 6320 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | ||||| | ||||| || || |||||| | || ||||| ||| Sbjct 6319 TCACTCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 6276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923001116898280