Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1580 264 8e-66 seq1579 262 3e-65 >seq1580 Length=61053 Score = 264 bits (292), Expect = 8e-66 Identities = 591/873 (68%), Gaps = 22/873 (3%) Strand=Plus/Minus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 || ||||| |||||||| |||||| |||||||||||||||| | ||||| || || || Sbjct 3603 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 3544 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAG 107831 ||||| || || | ||||||||||| |||||||| || ||||| ||| ||| | | Sbjct 3543 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAATCCTCTAAA 3484 Query 107832 ACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGT 107891 | ||| || |||| || |||| |||||||||||||| || || || || | |||||| Sbjct 3483 GCATTCCAAAAGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAGT 3424 Query 107892 AAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATG 107951 | || | ||||| ||||||||||||||||||||||| || || ||||||| ||| Sbjct 3423 ACATTAGAAAGCGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCAGATTTGAACTGCATG 3364 Query 107952 GAAGACTTGCTCCAGAGCTCA--GTGCCA-TGGAAGTACTTACTGAATACATGCGGGACA 108008 | || |||| || ||| | ||| ||||| ||||| ||||| || || ||||| Sbjct 3363 AAGGATCTGCT---GAATTCACGGATCCAGTGGAAATACTTGCTGAACACCTGTGGGACC 3307 Query 108009 GACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAG 108068 ||||||||||| || | ||| || || ||||| | | | || ||| | || || | | Sbjct 3306 GACTTCCCCATCAAAAGCAACGCAGAAATGGTTCAGACGCTGAAGGCCCTCAACGGGAGG 3247 Query 108069 AACAGTATGGAGTCTGAGGT-ACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTA 108127 ||||| |||||||| ||||| ||| | || | || ||| || ||| || | || Sbjct 3246 AACAGCATGGAGTCGGAGGTGACCAAC-GACTATAAGAAAGGCCGTTGGCTGTATCATTA 3188 Query 108128 TGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG-GACCCTCCCCCTGATAATT 108186 | ||||| | || || | ||| || |||| | ||| | ||| || Sbjct 3187 CAACGTGACTAATACTGTGGTCAAGACCGATGTGAAGAAGAGTCCCCCGCCC--ATCGGC 3130 Query 108187 TACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTC 108245 ||| ||||||||||| || || || ||||||| | |||||||||| ||||||| Sbjct 3129 AGCCCGATGTTCACAGGAAACGCTTACTTTGTGGTCAGCAGAGCCTTTGTGGAACATGTG 3070 Query 108246 TTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGAC 108305 | | || | || ||| | || |||| | ||||| || ||||| || Sbjct 3069 CTGCAGGACAGAGAGGTTCAGCAACTTCTGGAGTGGGAGAGGGACACATACAGCCCTGAT 3010 Query 108306 GAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGTGGATGCCTGGCTCTGTTCCTAG 108361 || ||| | |||||||| || ||||| || ||||| |||| || || || || Sbjct 3009 GAGCACTTGTGGGCCACTCTGCAGCGAATGCCCTCCG----TGCCCGGATCAGTGCCCGC 2954 Query 108362 CCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTA 108421 | || |||||| | | ||||||||| ||| |||| | || |||||| || Sbjct 2953 CAACATCAAGTACGATGTGTCAGACATGCAAGCCCTCGCTCGAGCGGTGAAGTGGAGCTA 2894 Query 108422 CCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAG 108481 | || |||||||| | | || || || || | |||||| || || | | Sbjct 2893 TCTAGAAGGAGATGTGAAAAAAGGAGCCCCGTACCCCCCCTGCATGGGTGCACACAGACG 2834 Query 108482 GGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA-ACCATCACCTCT 108540 || |||| | ||||| || || |||||| |||| | || ||| | |||| |||| Sbjct 2833 AGCGGTCTGTGTGTACGGAGCTGGTGACCTGCCCTGGCTCCT-GAGACAATATCAACTCT 2775 Query 108541 TGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 | ||||| |||||||| || || ||||||| Sbjct 2774 TTGCAAATAAGTTTGATCCTGATGTTGATGATA 2742 >seq1579 Length=133821 Score = 262 bits (290), Expect = 3e-65 Identities = 595/876 (68%), Gaps = 28/876 (3%) Strand=Plus/Minus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 || ||||| |||||||| |||||| |||||||||||||||| | ||||| || || || Sbjct 128623 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 128564 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC-AGA 107830 ||||| || || | ||||||||||| |||||||| || ||||| ||| ||| | | | Sbjct 128563 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAATCCTCTAAA 128504 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 | || |||| |||| || |||| |||||||||||||| || || || || | ||||| Sbjct 128503 GGATTCCAAA-AGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAG 128445 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 || || | ||||| ||||||||||||||||||||||| || || ||||||| || Sbjct 128444 TAGATTAGAAAGCGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCAGATTTGAACTGCAT 128385 Query 107951 GGAAGACTTGCTCCAGAGCTCA--GTGCCA-TGGAAGTACTTACTGAATACATGCGGGAC 108007 | | || |||| || ||| | ||| ||||| ||||| ||||| || || ||||| Sbjct 128384 GAAGGATCTGCT---GAATTCACGGATCCAGTGGAAATACTTGCTGAACACCTGTGGGAC 128328 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAA 108067 ||||||||||| || | ||| || || ||||| | | | || ||| | || || | Sbjct 128327 CGACTTCCCCATCAAAAGCAACGCAGAAATGGTTCAGACGCTGAAGGCCCTCAACGGGAG 128268 Query 108068 GAACAGTATGGAGTCTGAGGT-ACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCT 108126 |||||| |||||||| ||||| ||| | || | || ||| || ||| || | | Sbjct 128267 GAACAGCATGGAGTCGGAGGTGACCGAC-GACTATAAGAAAGTCCGTTGGCTGTATCATT 128209 Query 108127 ATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG-GACCCTCCCCCTGATAAT 108185 | | ||||| | || || | ||| || |||| | ||| | ||| || Sbjct 128208 ACAACGTGACTAATACTGTGGTCAAGACCGATGTGAAGAAGAGTCCCCCGCCC--ATCGG 128151 Query 108186 TTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244 ||| ||||||| ||| | || || ||||||| | |||||||||| ||||||| Sbjct 128150 CAGCCCGATGTTCAAAGGAAGCGCTTACTTTGTGGTCAGCAGAGCCTTTGTGGAACATGT 128091 Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304 | | || | || ||| | || |||| | ||||| || ||||| || Sbjct 128090 GCTGCAGGACAGAGAGGTTCAGCAACTTCTGGAGTGGGAGAGGGACACATACAGCCCTGA 128031 Query 108305 CGAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGTGGATGCCTGGCTCTGTTCCTA 108360 || ||| | |||||||| || ||||| || ||||| |||| || || || || | Sbjct 128030 TGAGCACTTGTGGGCCACTCTGCAGCGAATGCCCTCCG----TGCCCGGATCAGTGCCCA 127975 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTG--GCA 108418 | || |||||| | | ||||||||| ||| |||| | || ||||| ||| Sbjct 127974 CCAACATCAAGTACGATGTGTCAGACATGCAAGCCCTCGCTCGAGCGGTGAAGTGGAGCA 127915 Query 108419 GTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCG 108478 || | || |||||||| | | || || || || | |||||| || || | Sbjct 127914 GT--CTAGAAGGAGATGTGAAAAAAGGAGCCCCGTACCCCCCCTGCATGGGTGCACACAG 127857 Query 108479 GAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA-ACCATCACC 108537 | || ||||| | ||||| || || |||||| |||| | || ||| | |||| | Sbjct 127856 ACGAGCGGTCTGCGTGTACGGAGCTGGTGACCTGCCCTGGCTCCT-GAGACAATATCAAC 127798 Query 108538 TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 |||| ||||| |||||||| || || ||||||| Sbjct 127797 TCTTTGCAAATAAGTTTGATCCTGATGTTGATGATA 127762 Score = 215 bits (238), Expect = 4e-51 Identities = 251/333 (75%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 || ||||| |||||||| |||||| |||||||||||||||| | ||||| || || || Sbjct 129523 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 129582 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCC-CCAGA 107830 ||||| || || | ||||||||||| |||||||| || ||||| ||| ||| | | | Sbjct 129583 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAATCCTCTAAA 129642 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 | || |||| |||| || |||| |||||||||||||| || || || || | ||||| Sbjct 129643 GGATTCCAAA-AGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAG 129701 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 || || | ||||| |||||||| |||||||||||||| || || ||||||| || Sbjct 129702 TACATTAGAAAGCGTGGTCTATGCCTCGTGGTCCAGAGTGCAGGCAGATTTGAACTGCAT 129761 Query 107951 GGAAGACTTGCTCCAGAGCTCA--GTGCCA-TGGAAGTACTTACTGAATACATGCGGGAC 108007 | | || |||| || ||| | ||| ||||| ||||| ||||| || || ||||| Sbjct 129762 GAAGGATCTGCT---GAATTCACGGATCCAGTGGAAATACTTGCTGAACACCTGTGGGAC 129818 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGT 108040 ||||||||||| || | ||| || || ||||| Sbjct 129819 CGACTTCCCCATCAAAAGCAACGCAGAAATGGT 129851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348196825572618