Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3008 131 4e-25 >seq3008 Length=76608 Score = 131 bits (144), Expect = 4e-25 Identities = 620/981 (63%), Gaps = 42/981 (4%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 || ||||| ||| || |||||||| ||||||| || || || || | | |||| || Sbjct 41903 TTTGACAAGATCACGTCGCGCATCCAGAAGCTGTGCTACGGACTCAACGCTGACTTTGTG 41844 Query 248521 GATCATGTGGCC---ATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577 |||| |||| ||| | ||| || || ||| | |||| ||| || || ||| Sbjct 41843 GATCC---GGCCCAGATCACGATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACGACG 41787 Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637 || || ||||| | || ||||||| || || | | ||| | |||||||||| Sbjct 41786 GTGGAGCTCGACACGCTCGCCGCGGAGATCGCCGCCACCCTCACGACTAAACACCCCGAC 41727 Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCG 248697 ||| | | ||||| | | ||||||||||||| | | |||||||| ||||| || | Sbjct 41726 TACGCCATCCTGGCGGCGCGGATCGCCGTCTCCAACTTGCACAAAGAGACGAAGAAGGTG 41667 Query 248698 TTCGTCGAAACCATGGCTGACCTACATGCCTATGGGA------TGG-----------TCG 248740 ||| ||| |||| ||||| | ||| | | || || Sbjct 41666 TTCAGCGAGGTGATGGAGGACCTGTACAACTACGTCAACCCCCTGAACAGACGCCACTCC 41607 Query 248741 CCGATGACGTCC----ACACCGTCA------TTCAGGACAACGCGCACCTCCTGGACGGC 248790 || |||| ||| |||| ||| |||| |||||| ||| ||| || Sbjct 41606 CCCATGATCTCCGAGAACACGCTCAAGCTTGTTCAAGACAACAAAGACCGCCTCAACTCG 41547 Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || || | || | |||||| ||| | ||||| | ||||| || |||||| | Sbjct 41546 GCCATCATTTTCGACCGAGATTTCTCCTACAACTTCTTCGGCTTCAAGACCCTGGAGCGA 41487 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || | || || | ||||| | | || || ||||||||| | ||||| Sbjct 41486 TCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGCGC 41427 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACACCGGAAT 248969 ||| | |||||||| ||| | ||||| || ||| | |||||||||||| | | Sbjct 41426 GTGTCCGTCGGGATCCACGAAACGGACATCGAC-GCGGCCATCGAGACGTACAACCTGCT 41368 Query 248970 GAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAA 249029 | || | ||| | || || ||| | || || ||||||||||| || ||| || Sbjct 41367 GTCGGAGAGGTGGTTCACCCACGCCTCCCCCACCCTCTTCAACGCGGGCACCAACAGGCC 41308 Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 |||||| | ||||| || || |||||| | |||||| |||| ||||| || || Sbjct 41307 ACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAGGGCATCTACGA 41248 Query 249090 CACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTC 249149 ||| | || ||| || || || |||| || || || ||||| | ||||| Sbjct 41247 CACCTTGAAGCAGTGCGCCCTCATCTCCAAATCAGCCGGGGGGATCGGCGTGGCCGTCAG 41188 Query 249150 CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGT 249209 | |||||| ||| ||| |||||| || || || || | | || |||| Sbjct 41187 CTCCATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGT 41128 Query 249210 ACCCCTCCTTCGATGCTTT--GAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC--- 249264 ||| | || | | ||| | ||| || | | | | |||||| |||| | Sbjct 41127 CCCCATGCT--AAGGGTTTACAACAACACGGCGCGTTACGTGGACCAGGGCGGGAACAAG 41070 Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || || | ||||||||||| |||| |||||| || | || || |||||| Sbjct 41069 AGACCCGGCGCTTTCGCCATGTACCTGGAGCCCTGGCACTTTGACGTGTTCGACTTCCTG 41010 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || |||| ||||||| || || ||| |||||| | ||||| ||||||| | || Sbjct 41009 GAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGCCATG 40950 Query 249385 TGGGTCTCCGACTTGTTCATG 249405 ||| || ||||| |||||||| Sbjct 40949 TGGATCCCCGACCTGTTCATG 40929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073533111834176