Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq562 102 6e-17 >seq562 Length=198046 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || |||| Sbjct 185763 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 185822 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || || || || | ||| ||||| ||| | Sbjct 185823 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGA 185882 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 185883 TCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGC 185942 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || || ||||||||||| |||||||| Sbjct 185943 CAGTGAGGGTTTTCACAAAGATCTGCATGTT 185973 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || |||| Sbjct 188465 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 188524 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || || || || | || ||||| ||| | Sbjct 188525 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGA 188584 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| || || ||||||| Sbjct 188585 TCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGC 188644 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || |||||||||||||| |||||| Sbjct 188645 CAGTGAGGGTCTTCACAAAGATCTGCATG 188673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || ||||| || || ||||| || Sbjct 188938 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 188997 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||| ||| || || ||| || | Sbjct 188998 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189057 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| || || |||||||| || || ||||||||| Sbjct 189058 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 189117 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 189118 AAGATCTGCATG 189129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || ||||| || || ||||| || Sbjct 189166 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 189225 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||| ||| || || ||| || | Sbjct 189226 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189285 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| || || |||||||| || || ||||||||| Sbjct 189286 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 189345 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 189346 AAGATCTGCATG 189357 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || ||||| || || || || || Sbjct 185552 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 185611 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||| ||| || || ||| || | Sbjct 185612 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 185671 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| || || |||||||| || || ||||||||| Sbjct 185672 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 185731 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 185732 AAGATCTGCATG 185743 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || ||||| || || ||||| || Sbjct 188710 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 188769 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||| ||| || || ||| || | Sbjct 188770 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 188829 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| || || |||||||| || || |||||||| Sbjct 188830 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACG 188889 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 188890 AAGATCTGCATG 188901 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || ||||| || || ||||| || Sbjct 189394 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 189453 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||| ||| || || ||| || | Sbjct 189454 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189513 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| || || || |||||| Sbjct 189514 TCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACA 189573 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 189574 AAGATCTGCATATT 189587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394993552401097