Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3008 569 2e-157 seq594 125 6e-24 >seq3008 Length=76608 Score = 569 bits (630), Expect = 2e-157 Identities = 1111/1632 (68%), Gaps = 29/1632 (2%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAAT---TTTTAATCGTATCGTTCCACAAACC 22422 ||| ||||||||||| ||| ||||| | | || ||| |||||||||| || Sbjct 39945 CTGAACGGACCCGTT---GTGACCGATCAGCTGGTTCTTCATCTCCTCGTTCCACAGCCC 40001 Query 22423 GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGAC 22482 | | |||| ||||||| |||||| |||| || | || ||||| ||||| | ||| Sbjct 40002 CCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGACTATCTGGAACTCCCCGGAGAGGAC 40061 Query 22483 GCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTG 22542 | ||| ||| |||||| ||| | || |||| || || ||||| ||||| ||||| Sbjct 40062 CCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTG 40121 Query 22543 AGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGA 22602 ||||| || || || ||||||||||||| ||| || ||| |||| ||||||||| | Sbjct 40122 GGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGC 40181 Query 22603 AATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 || || ||| |||| ||||||| ||| |||| ||| || || |||||||| Sbjct 40182 GATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGGCTTC---TTCTCCCACAT 40238 Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722 ||||| |||| | ||| || || | |||| ||| ||||||| ||||| || || | Sbjct 40239 GTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCG-A 40297 Query 22723 TATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT 22781 ||| |||| || |||||||||||||||| ||| |||| || | ||||||||||| | Sbjct 40298 GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCT 40357 Query 22782 TCTTGTTCAATTCGGCGGCGG--CGACGCTTTCGTACGGCATACGCATCATCACGAACGC 22839 | |||||| | || | | || ||| ||| |||| |||||| | | ||| || Sbjct 40358 GCGTGTTCAG--CAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGC 40415 Query 22840 GTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC 22899 ||| |||| || || ||||| || || ||||| |||| | || ||| || || Sbjct 40416 GTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGC 40475 Query 22900 CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTT 22959 |||||||| ||||| | || ||||| | ||||||||||| || | | ||| Sbjct 40476 CTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTT 40535 Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA--ACAAACTTGTTG 23017 || | | |||||| ||| | | | | | || || ||||| Sbjct 40536 GGTCACGGCTGCGAGTTTCTTAAAGTC--AAAGGTCTGCTCGGGGGTGACGTACATGTTG 40593 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | |||| |||||| || ||||| ||||| |||||||| | | ||||| || || ||| Sbjct 40594 AGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATT 40653 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 || || || || ||||| |||| || ||||||| ||| |||||||| || | ||| Sbjct 40654 TCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTG 40713 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | || ||||| |||||||| |||||||| || ||| ||| ||||||||||| || Sbjct 40714 CAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCG 40773 Query 23198 CGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 |||||| ||| | | ||| |||| ||| | ||| || || | |||||| Sbjct 40774 TGCCACAGCTGCTGGGACTTGACCACG-CGCTTGGCCCTCCCCTCCTTCTCGTAGGACGT 40832 Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316 ||| | | ||||| || | || | || ||| |||| ||||| | | | ||||| Sbjct 40833 GTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACA 40892 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 |||||| ||| || | || || || |||| || || || || ||||| | Sbjct 40893 CATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACAT 40952 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || || | ||| | | |||||| || || |||||||| |||| |||| Sbjct 40953 GGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAG 41012 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||||| |||||||| ||||| ||||| ||||| | ||| || ||||| |||||||| Sbjct 41013 GAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTT 41072 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 || |||||||| || |||||||| |||||||||||||| || |||||||| || ||||| Sbjct 41073 GTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAG 41132 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG--TTGTG- 23613 |||||||| |||| ||| || | | | || |||| || | | | Sbjct 41133 CCCGTTGGAGTTGCCGTTGGTGCCGGCGA----TGTAGCTGCCCGTCGAGCGGATGGAGC 41188 Query 23614 -AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 ||| | || || || ||| | ||||| || || | ||||| || |||| |||| Sbjct 41189 TGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGT 41248 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||||||||||||||||||||| || || | |||| || ||| || |||| || | Sbjct 41249 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 41308 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 || || | || ||| || || ||| |||||| || || | | | ||||| Sbjct 41309 GCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACA 41368 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 || |||||||| |||||||| || || |||||| | |||| || |||| || |||| Sbjct 41369 GCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGC 41428 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 |||| | ||||| || || | |||| || |||||| || || ||||| || || | Sbjct 41429 GCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATC 41488 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | | || || || || || || ||| ||| || || || ||| | ||||||| Sbjct 41489 GCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCG 41548 Query 23973 AATTCAAACGGT 23984 | || | |||| Sbjct 41549 AGTTGAGGCGGT 41560 >seq594 Length=47165 Score = 125 bits (138), Expect = 6e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| ||||||||||| || || || || |||||||| | ||||| || Sbjct 29773 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGT 29832 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | |||||||||||||||||||| || Sbjct 29833 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGT 29892 Query 23167 GCCCGTCTCGACCTGCGACTCGATGAT 23193 || || || ||||||||| ||||| Sbjct 29893 ACCAGTTTCTGTCTGCGACTCAATGAT 29919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445671914239440