Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3008 374 1e-98 seq2247 96.9 4e-15 seq594 96.9 4e-15 >seq3008 Length=76608 Score = 374 bits (414), Expect = 1e-98 Identities = 1252/1940 (65%), Gaps = 13/1940 (1%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || ||||| | ||||| || | || | || ||||| ||||| Sbjct 39976 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTG 40035 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 |||| ||||| || || || | || || || ||||| || || ||||| || || || Sbjct 40036 ACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCG 40095 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 40096 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGC 40155 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | ||| || || || || | |||| | | || Sbjct 40156 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGG 40215 Query 62565 TCCGACGG-TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCC 62623 || | || | | | || || || || || ||| || | || Sbjct 40216 TCGGTGGGCTTCTTCTCCCACATGTCG-TACTGCAGGATGCCCCGGCTGACGGGGCAGCC 40274 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | || || || || || || || | || || | || |||||||| | || | Sbjct 40275 CGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 40334 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 ||| || | ||| || ||||||| | | || || || ||||| ||||| || || || Sbjct 40335 GTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACGG 40394 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 ||| | ||| || || ||||| || || ||||| || || || || || || | || Sbjct 40395 GTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTG 40454 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | | | || || |||| || || || | ||||| | || || || || || || || Sbjct 40455 GCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTT 40514 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TC-GCCC 62920 | ||| |||| ||||||||| ||| | ||||| ||| ||||| || || | Sbjct 40515 CAAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCTGCTC 40574 Query 62921 ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TA 62978 | || ||||||| | || || || ||||| || || ||||| ||||| | | Sbjct 40575 GGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTG 40634 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 || | |||| | || || ||||| || || || ||||||| || || | ||| Sbjct 40635 GCTGGTG--TATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 40692 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 || || || ||||| |||| || || || || || || ||| |||| || || ||||| Sbjct 40693 TGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCG 40752 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT 63157 |||| || || || || || | ||| | | || | | ||| | | ||| || Sbjct 40753 GTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGG-GACTTGACCACGCGCTTGGCCCT 40811 Query 63158 CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63217 || || | ||||| || || | ||| ||||| || ||||| | ||||| Sbjct 40812 CCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAG 40871 Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 | || || || | |||||||| | ||||| || || || ||| || ||||| Sbjct 40872 CCCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCAT 40931 Query 63278 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 || || || || ||||| | || || ||| || || || | ||| || ||||| |||| Sbjct 40932 GAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTC 40990 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | || ||||| || || || ||||| | | | ||| | ||||| || |||| ||| | Sbjct 40991 CCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACA 41050 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | | || || | ||||| || ||||| || | ||| | || ||||| || | Sbjct 41051 TGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGT 41110 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 |||| || | ||| || | | ||||| || | || ||||| |||| ||| |||| | Sbjct 41111 AAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGC 41170 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | | | || || || | | | || || ||||| || ||| ||||| | | Sbjct 41171 CCGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGG 41230 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 |||| | || || ||||| |||||||| || ||||| || || ||||| || || | Sbjct 41231 CGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 41290 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | ||||| |||| || | | | || ||||| || || | ||| || || ||||| | Sbjct 41291 AGCAGCTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGG 41350 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | ||||| | || || || || ||||||||||| || || | ||| || ||| || | Sbjct 41351 TGAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGT 41410 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || || || | || ||||| | ||||||||| || | || | | |||| ||| | Sbjct 41411 GGATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGA 41470 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 | ||||||| ||||||| |||| || || || || || ||||||| || || |||| Sbjct 41471 TCTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTC 41530 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA 63936 | ||| |||| || |||| ||||| || || | | | ||| | | | || Sbjct 41531 GGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTGTCTTGAACAAGCTTGAGCGTGT 41590 Query 63937 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63996 | || || || || || || | || || || || |||||| | | |||| Sbjct 41591 TCTCGGAGATCATGGGGGAGTGGCGTCTGTTCAGGGGGTTGACGTAGTTGTACAGGTCCT 41650 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 ||||||| || || || | || || || || ||||| | || || | ||| || | | Sbjct 41651 CCATCACCTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTGGAGACGGCGATCCGCG 41710 Query 64057 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCA 64116 | || || ||||| || || || |||| || || ||||| || || || || || | Sbjct 41711 CCGCCAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGGGTGGCGGCGATCTCCGCGGCGA 41770 Query 64117 GAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTA 64176 | ||||| | || ||||| || || || | || | || || || |||||||| | | Sbjct 41771 GCGTGTCGAGCTCCACCGTCGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTGA 41830 Query 64177 TTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACG 64236 | | ||||| | | || | ||| | || ||||||| || || || |||| Sbjct 41831 TCTGGGCCGGATCCACAAAGTCAGCGTTGAGTCCGTAGCACAGCTTCTGGATGCGCGACG 41890 Query 64237 TGATTTTATCAAACATGACA 64256 |||| || |||||||||||| Sbjct 41891 TGATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||||| || | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | ||||||||||| || || || ||||||||||| || || || ||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 33724 C 33724 | Sbjct 52824 C 52824 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 62114 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62173 ||| || || || ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 62174 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62233 | || || || || |||||| |||| || | ||||| ||||| || | || ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 62234 TTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTT 62269 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| || || ||||| ||||| | || | || |||||||| | ||| Sbjct 30266 CTCCACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCT 30325 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| || || || ||||| || | || | ||| | | | ||| || ||||| Sbjct 30326 CTGCTCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCA 30385 Query 63383 CGGTTCCAAGTATATGGC 63400 |||||||||||| | ||| Sbjct 30386 CGGTTCCAAGTACACGGC 30403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| || ||||| || || ||||| || | |||||| | || || || | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 || || || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629684102286960