Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3008 392 4e-104 seq2247 96.9 5e-15 seq594 96.9 5e-15 >seq3008 Length=76608 Score = 392 bits (434), Expect = 4e-104 Identities = 1058/1609 (66%), Gaps = 11/1609 (1%) Strand=Plus/Plus Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || || || || |||||||| | || |||| || | ||| |||||||||| | | || Sbjct 40306 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTC 40365 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 || || ||||| |||| || || || ||| | ||| || || ||||| || || Sbjct 40366 AGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAG 40425 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| || || || || || || | || | | | || || |||| || || || | Sbjct 40426 CCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACC 40485 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||| | || || || || || || || | ||| |||| ||||||||| ||| | Sbjct 40486 GGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCT 40545 Query 65688 TTCAGTTTGAGAAAATCAAA--TC-GCTCATCTATTACAAACATGTTCAATGCAACAGAT 65744 ||||| ||| ||||| || |||| | || ||||||| | || || || Sbjct 40546 GCGAGTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCGAG 40605 Query 65745 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 ||||| || || ||||| ||||| | | || | |||| | || || ||||| | Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTG--TATTCGACGATTTCCGTGCAGA 40663 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 | || || |||||||||| || | ||| || || || ||||| |||| || || || | Sbjct 40664 GGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTT 40723 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 65921 | || || ||| |||| || || ||||| |||| || || || || || | ||| | | Sbjct 40724 TGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCT 40783 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 65981 || | | ||| | | ||| ||| || | ||||| || || | | Sbjct 40784 GCTGG-GACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTT 40842 Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || ||||| | ||||| || || || || | |||||||| | ||| Sbjct 40843 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGAC 40902 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 66100 || || || || ||| || ||||| || || || || ||||| | || || ||| Sbjct 40903 CAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA 40962 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 40963 -AGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAA 41021 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| | ||||| || |||| ||| ||||| | | | || || | ||||| || || Sbjct 41022 CACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCC 41081 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | || ||||| || ||||| || | ||| || | | || ||||| Sbjct 41082 CTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGA 41141 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 | || ||||| |||| ||| ||||| || | | || || || | | | || Sbjct 41142 GTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCC 41201 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || ||||| || ||| ||||| | ||||| | || || || || ||||||||||| Sbjct 41202 GATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTC 41261 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || || ||| ||||| || || || ||||| |||| || | | | || || Sbjct 41262 GATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCC 41321 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 ||| || || | ||| || || ||||| || ||||| | || || || || |||||||| Sbjct 41322 CGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACGT 41381 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| || || | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 41382 CTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTG 41441 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||| || | || | | ||| ||| || ||||||| ||||||| |||| || || Sbjct 41442 CTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTT 41501 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 || || || ||||||| || || ||||| ||| |||| || |||||||||| || Sbjct 41502 GAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTC 41561 Query 66701 CTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATT 66760 || | | | ||| | | | || | || || || || || || | || Sbjct 41562 TTTGTTGTCTTGAACAAGCTTGAGCGTGTTCTCGGAGATCATGGGGGAGTGGCGTCTGTT 41621 Query 66761 TTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 66820 || ||||| |||||| | | ||||||||||| || || || | || || || || Sbjct 41622 CAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTC 41681 Query 66821 TTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGT 66880 |||||| | || || ||||| || | || || | ||||| || || || |||| || Sbjct 41682 TTTGTGCAAGTTGGAGACGGCGATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGT 41741 Query 66881 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 66940 || ||||| || || || || || || ||||| | || ||||| || || || | Sbjct 41742 CGTGAGGGTGGCGGCGATCTCCGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCT 41801 Query 66941 ATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAA 67000 || | || ||||| |||||||| | || | ||||| | | |||| ||| | Sbjct 41802 GTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAG 41861 Query 67001 GCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 67049 || || || | || || || || ||||| || |||||||||||| Sbjct 41862 TCCGTAGCACAGCTTCTGGATGCGCGACGTGATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||| | ||||| || || || ||||| ||||| ||||| || || |||||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 36300 C 36300 | Sbjct 52824 C 52824 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 64907 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 64966 ||| || || || ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 64967 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 65026 | || || || || |||||| |||| || | ||||| ||||| || | || ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 65027 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 65062 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || |||||||| || ||||| || |||||||| | || || | | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 || || || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658033292047880