Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq4516 159 2e-34 >seq4516 Length=36694 Score = 159 bits (176), Expect = 2e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || ||||| ||| |||||||| ||||||| ||| ||||||| ||| || | | ||| Sbjct 16398 CACTTCCCCACCTTCTCCTGCAAGGAGGACTGCAAGATCATCACGGAGACCG-CGTCCAA 16456 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || | |||||||||||| || ||||| || |||||||| || || ||||| Sbjct 16457 GCTCGAGCGCAGCGCCTTCTACTGGGGCCCCTTGGGAGTGGAGGAGGCCCACCGCATGCT 16516 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | ||||||||||| ||||| || || ||| |||| ||||||||||| || Sbjct 16517 GCGGGACGCCCCGCTGGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTCTT 16576 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| || ||| || ||||| ||| | || || |||||| Sbjct 16577 CACGCTGTCCTACCACGGCAAGAGCGGGCCGGTCAGCGTGCGCATCGACTACAAG 16631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356159979539671