Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3008 114 1e-20 >seq3008 Length=76608 Score = 114 bits (126), Expect = 1e-20 Identities = 540/847 (64%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 153357 CTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCA 153416 || || || || ||||| | || | || ||| | ||||| ||||||| | | | | Sbjct 40318 CTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAG--CTG-A 40374 Query 153417 GCATCG---CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATG 153473 || ||| ||| || |||| |||| | || || || |||||||| ||||| | | Sbjct 40375 GCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACG 40434 Query 153474 CCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAA 153533 || || ||||| || || |||||| | || || |||| || | || |||||||| Sbjct 40435 CCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAG 40494 Query 153534 TTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGT 153593 ||| |||||| || || || || | | |||| ||| ||| | ||| | | Sbjct 40495 TTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGC-TGCGAGTTT 40553 Query 153594 -TGAAAATCAAACGTTCCATTAA---TGATATATTTGTTGACGGCAATCGACGCCAAGTT 153649 | ||| ||||| || | ||| || |||||| || | ||| |||| ||| Sbjct 40554 CTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTT 40613 Query 153650 GCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCA 153709 ||| ||||| |||||| || | |||| || ||||||| || | |||||| | Sbjct 40614 GCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGA 40673 Query 153710 TTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCAT 153769 || || ||| ||| || ||||| || | ||| || ||||| ||||| ||||| Sbjct 40674 CTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCAT 40733 Query 153770 GTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGACCGCGGG 153829 |||||| ||||||||||||| || || || || | || || | || || Sbjct 40734 GTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACA-----GCTGCTGG 40788 Query 153830 CATTTGATCGCGAAACTGGCCCTTGTCT-----TCGTAGTGTTTGTACCAGTATTCAAAC 153884 | |||| | || ||||||| || |||||| |||| | ||||||| Sbjct 40789 GACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAAC 40848 Query 153885 TCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCA-TCG 153943 || || || | | || ||| |||| || |||||||||||||| || ||||| || Sbjct 40849 TCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACCAGTC- 40907 Query 153944 GCCATTTTCT-TGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGT 154002 | || || | || || ||| || | ||||| | ||| | ||||| | |||| Sbjct 40908 -CTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGT 40966 Query 154003 CGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGT 154062 | | ||| || || || | || |||| || | | || ||| | | || Sbjct 40967 CCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGT 41026 Query 154063 CGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTG---CCGCCCTGAT 154119 | | ||||| || |||| ||| | || |||||| | |||| |||||||| | Sbjct 41027 CAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGT 41086 Query 154120 TTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTAC 154179 |||| |||| || | |||||| |||||| |||||||| | || ||| ||| | | | Sbjct 41087 CCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGC 41146 Query 154180 CGTTTGT 154186 |||| || Sbjct 41147 CGTTGGT 41153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495958853034400