Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3008 401 9e-107 seq2247 105 1e-17 seq594 102 1e-16 >seq3008 Length=76608 Score = 401 bits (444), Expect = 9e-107 Identities = 1258/1939 (65%), Gaps = 11/1939 (1%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || ||||| | ||||| || | || | || ||||| || || Sbjct 39976 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTG 40035 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 |||| || || || || || | || || || ||||| || || ||||| || || || Sbjct 40036 ACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCG 40095 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 40096 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGC 40155 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | || || || | |||| ||| || || || || |||| ||| || Sbjct 40156 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGG 40215 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCT 79296 || | || | ||| | || || || || || || || || | || Sbjct 40216 TCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCCC 40275 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 | ||| || || || || || || |||| | || || |||||||| | || || Sbjct 40276 GCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 40335 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 || || | ||| ||||| |||| | | || || || ||||| |||| || || || Sbjct 40336 TAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACGGG 40395 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 ||| | ||| || || ||||| || || ||||| || || || || || || | || Sbjct 40396 TAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGG 40455 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 | | | || || |||| || || || | ||||| | || || || || || || || Sbjct 40456 CGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTC 40515 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CA 79593 | || |||| ||||||||| ||| | ||||| ||| ||||| || | | Sbjct 40516 AAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCTGCTCG 40575 Query 79594 TCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 79651 | || ||||||| | |||||| || ||||| || || ||||| ||||| | | | Sbjct 40576 GGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGG 40635 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | | |||| | ||||| ||||||||||| || |||| ||||| || | ||| | Sbjct 40636 CTGGTG--TATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 40693 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || || ||||| |||| || || || || || || ||| | || || || ||||| Sbjct 40694 GGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGG 40753 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTC 79830 |||| || || || || || | ||| | | || | | ||| | | |||| ||| Sbjct 40754 TCTGGGACTCGATGATGGCGTGCCACAGCTGCTGG-GACTTGACCACGCGCTTGGCCCTC 40812 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 || | ||||| || || | ||| ||||| || ||||| ||||| | Sbjct 40813 CCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 40872 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| |||||||| | ||||| || | || || || ||||| Sbjct 40873 CCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATG 40932 Query 79951 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || || || || ||||| | || || ||| || || |||| ||| |||||||| ||||| Sbjct 40933 AACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTCC 40991 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 || ||||| || || || ||||| | | | ||| | ||||| || |||| ||| || Sbjct 40992 CGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACAT 41051 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | | || |||| ||||| || ||||| || | ||| | || ||||| || || Sbjct 41052 GGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTA 41111 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 ||| || | ||| || | | || ||||| | || ||||| |||| ||| ||||| || Sbjct 41112 AACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC 41171 Query 80190 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | | || || || | | | || || ||||| || ||| ||||| | || Sbjct 41172 CGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGC 41231 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| | || || || || ||||||||||| ||||| || || ||||| || || || Sbjct 41232 GCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 41291 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 ||||| |||| || | | | || ||||| || || | ||| || || ||||| || Sbjct 41292 GCAGCTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGT 41351 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||||| | || ||||| || ||||||||||| || || | || || ||| || || Sbjct 41352 GAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTG 41411 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 || || || | || ||||| | ||||||||| || | || | | ||| || || Sbjct 41412 GATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGAT 41471 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||||||| ||| ||| |||| || || || || || ||||||| || || ||||| Sbjct 41472 CTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCG 41531 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGAT 80609 ||| |||| || |||||||||| || || | | | ||| | | | ||| | Sbjct 41532 GTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTGTCTTGAACAAGCTTGAGCGTGTT 41591 Query 80610 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669 || || || || || || | || || || || |||||| | | ||||| Sbjct 41592 CTCGGAGATCATGGGGGAGTGGCGTCTGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTC 41651 Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729 |||||| || || || | || || || || ||||| | || || ||||| || | || Sbjct 41652 CATCACCTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTGGAGACGGCGATCCGCGC 41711 Query 80730 GGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAG 80789 || | ||||| || || || |||| || || ||||| || || || || || || Sbjct 41712 CGCCAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGGGTGGCGGCGATCTCCGCGGCGAG 41771 Query 80790 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 80849 ||||| | || ||||| || || || | || | || ||||| |||||||| | || Sbjct 41772 CGTGTCGAGCTCCACCGTCGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTGAT 41831 Query 80850 TTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGT 80909 | ||||| | | |||| ||| | || || || | || || || ||||| Sbjct 41832 CTGGGCCGGATCCACAAAGTCAGCGTTGAGTCCGTAGCACAGCTTCTGGATGCGCGACGT 41891 Query 80910 GATTTTATCAAACATGACA 80928 ||| || |||||||||||| Sbjct 41892 GATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| || |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | ||||| || || || ||||| ||||||||||| || || || ||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 50102 CAACAA 50107 | |||| Sbjct 52824 CCACAA 52819 >seq594 Length=47165 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 78786 CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 78845 ||| || ||||| ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 78846 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 78905 | || || || || |||||| |||| || | ||||| ||||| || | || ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 78906 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 78941 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| || || ||||| ||||| | || | || |||||||||| ||| ||| Sbjct 30270 ACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCTCTGC 30329 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || | || | ||| | | | ||| || ||||||||| Sbjct 30330 TCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCACGGT 30389 Query 80059 TCCAAGTATATGGC 80072 |||||||| | ||| Sbjct 30390 TCCAAGTACACGGC 30403 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || ||||| || || ||||| || |||||||| | || || | | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 || || || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718116553949480