Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3008 385 6e-102 seq594 102 1e-16 seq2247 93.3 6e-14 >seq3008 Length=76608 Score = 385 bits (426), Expect = 6e-102 Identities = 1061/1613 (66%), Gaps = 15/1613 (1%) Strand=Plus/Plus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || |||||||| | || | || || | ||| ||||| |||| | | | Sbjct 40304 CGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGT 40363 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || ||||| ||||| || || || ||| | ||| || || ||||| || | Sbjct 40364 TCAGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCA 40423 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 | ||||| ||||| || || || || | ||| | | | || || |||| || || || | Sbjct 40424 AGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCA 40483 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 ||||| | || || || || || || || | ||| |||| ||||||||| ||| Sbjct 40484 CCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGG 40543 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 | ||||| ||| ||||| || || | || ||| ||| | || || | Sbjct 40544 CTGCGAGTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCG 40603 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||| | | || || |||| | ||||| ||||| Sbjct 40604 AGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCT--GGTGTATTCGACGATTTCCGTGCA 40661 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || |||||||||| || | ||| || || || ||||| |||| || || || Sbjct 40662 GAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTC 40721 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || || || | || || || ||||| |||| || || || || || | ||| | Sbjct 40722 TTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAG 40781 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 | || | | ||| | | |||| ||| || | ||||| || || | Sbjct 40782 CTGCTGG-GACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCT 40840 Query 71942 GTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 ||| ||||| || ||||| ||| | ||| | || || || || || |||||||| | Sbjct 40841 TTTCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGG 40899 Query 72001 GACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TA 72058 ||||| || | | || | || || ||||| || || || || ||||| | || || Sbjct 40900 GACCAGTCCTGGTTGCTC-TCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTA 40958 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 ||| || || |||| ||| |||||||| ||||| || ||||| || || || ||||| Sbjct 40959 GAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 41017 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || |||| ||| ||||| | | | || || | ||||| | Sbjct 41018 CGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCC 41077 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | ||||| || | ||| | || ||||| || ||||| || | ||| || | | || | Sbjct 41078 CGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGT 41137 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 |||| || ||||| |||| ||| ||||| || | | || || ||| | | | Sbjct 41138 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCA 41197 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || ||||| || ||| ||||| | ||||| | || || || || ||||||| Sbjct 41198 CGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGC 41257 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || || ||| ||||| || || || ||||| |||| || | | | | Sbjct 41258 CCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGG 41317 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | ||||| || || | ||| || || ||||| || ||||| | || ||||| || |||| Sbjct 41318 TGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGT 41377 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| || || | || || ||| || || || || || | || ||||| | || Sbjct 41378 ACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCA 41437 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || | | ||| || || ||||||| ||||||| |||| | Sbjct 41438 TGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGG 41497 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || || || ||||||| || || ||||| ||| |||| || |||| ||||| Sbjct 41498 TCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGGC 41557 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCC 72718 || || | | | ||| | | | ||| | || || || || || || | Sbjct 41558 GGTCTTTGTTGTCTTGAACAAGCTTGAGCGTGTTCTCGGAGATCATGGGGGAGTGGCGTC 41617 Query 72719 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 72778 || || || || |||||| | | ||||||||||| || || || | || || | Sbjct 41618 TGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTCG 41677 Query 72779 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTT 72838 | || ||||| | || || ||||| || | || || || ||||| || || || |||| Sbjct 41678 TCTCTTTGTGCAAGTTGGAGACGGCGATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTT 41737 Query 72839 GTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 72898 || || ||||| || || || || || || ||||| | || ||||| || || | Sbjct 41738 TAGTCGTGAGGGTGGCGGCGATCTCCGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGC 41797 Query 72899 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 72958 | | || | || ||||| |||||||| | || | ||||| | | |||| || Sbjct 41798 CGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGATCCACAAAGTCAGCGT 41857 Query 72959 TTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACA 73011 | | || || || | || || || |||||||| || |||||||| ||| Sbjct 41858 TGAGTCCGTAGCACAGCTTCTGGATGCGCGACGTGATCTTGTCAAACATGACA 41910 >seq594 Length=47165 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || ||||| || || ||||| || |||||||| | || || || | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 || || || ||||||| || || ||||| || | ||||||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| || || ||||| ||||| | || | || |||||||||| ||| ||| Sbjct 30270 ACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCTCTGC 30329 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || ||||| || | || | ||| | | | ||| || ||||||||| Sbjct 30330 TCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCACGGT 30389 Query 72142 TCCAAGTATATGGC 72155 |||||||| | ||| Sbjct 30390 TCCAAGTACACGGC 30403 >seq2247 Length=89140 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || || || || || ||||| ||||||||||| || || |||||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 42207 C 42207 | Sbjct 52824 C 52824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670996943657320