Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3008 154 2e-32 seq14194 93.3 6e-14 seq14193 93.3 6e-14 seq9580 93.3 6e-14 >seq3008 Length=76608 Score = 154 bits (170), Expect = 2e-32 Identities = 373/564 (66%), Gaps = 18/564 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || || || || ||||| || | ||||| | | | || Sbjct 41153 ACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTAAGGGTTTACAACAACACGGCGCGT 41094 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| |||||||| || || | || |||||| | ||| | ||| |||| || ||| Sbjct 41093 TACGTGGACCAGGGCGGGAACAAGAGACCCGGCGCTTTCGCCATGTACCTGGAGCCCTGG 41034 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| || ||||| | ||| || || ||| | || || ||| || Sbjct 41033 CACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGA 40974 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||||||| | || || || | ||| | || || ||||||||||||| || | Sbjct 40973 GCCAGGGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGCGGGTGGAGAGC 40914 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| ||| ||||| ||| || || ||||| ||| ||| ||| Sbjct 40913 AACCAGG------ACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGC 40860 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || |||||||| ||| |||||| |||||||| | ||||| | | | Sbjct 40859 TGGGGGGAGGAGTTTGAA---AAGCTCTACACGTCCTACGAGAAGGAGGGGAGGGCCAAG 40803 Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 | ||| | | | | |||||| | |||||| | | | ||| || || || Sbjct 40802 CGCGTGGTCAAGTCCCAGCAGCTGTGGCACGCCATCATCGAGTCCCAGACCGAAACCGGC 40743 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || || ||||| || ||||| || || || | || |||||||| | | ||||| Sbjct 40742 ACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAATCTGGGC 40683 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| | ||| || ||||||||||| || || ||| || | |||||| Sbjct 40682 ACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCACGACGAGGTC 40623 Query 97338 GCAGTTTGCGTTCTGGCATCGGTC 97361 || || ||| ||||| |||||| Sbjct 40622 GCCGTCTGCAACCTGGCCTCGGTC 40599 >seq14194 Length=7087 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||| ||||| |||||||||||||| || ||| || || |||||||| | Sbjct 3620 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 3561 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 3560 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 3527 >seq14193 Length=36040 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||| ||||| |||||||||||||| || ||| || || |||||||| | Sbjct 33055 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 33114 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 33115 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 33148 >seq9580 Length=8214 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 69962 GGATCGACCAATGCCAAAGAGCTGA-GCCGAAAGGGTGTACACATTTGGAGCGGCAACAG 70020 |||||||| |||||||| ||||| | ||||||| || | |||||| | |||| | Sbjct 7431 GGATCGACGAATGCCAAGGAGCTCTCGGAGAAAGGG-GTGAAGATTTGGGAGGCCAACGG 7373 Query 70021 TAGTCGAAGCGTTT--TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGG 70078 |||| | || |||| ||||| ||| |||| ||| | |||||||| |||||| Sbjct 7372 --GTCGCGGGACTTCCTGGACAACCTCGGGTTCTCCGAGAGAGAGGAGGGCGACCTGGGG 7315 Query 70079 CCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTA 70119 || |||||||| |||||||||||||||| ||| || |||| Sbjct 7314 CCCGTGTACGGTTTCCAGTGGAGGCACTTTGGCGCCGAGTA 7274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740902123239320