Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1046 91.5 3e-13 >seq1046 Length=17845 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| | |||||||||| |||||||| || || || || || || || | || |||| Sbjct 6439 GAGCTCTGTGGTGGTATTTCATCTCTAAGGGCATTGAGTATCTGGACACGGTGTTTTTCA 6380 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 |||| | || ||||| || || ||| ||| | ||||| || || || | || |||| Sbjct 6379 TCCTGAGGAAAAAATTCAACCAGGTTACTTTCTTGCATGTCTACCACCACTGCACCATGT 6320 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||| | | ||||| || || |||||| | ||||||||||| Sbjct 6319 TCACTCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 6277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151148245384556