Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq9580 134 9e-27 >seq9580 Length=8214 Score = 134 bits (148), Expect = 9e-27 Identities = 121/151 (80%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||| || ||||| ||||||| |||||| Sbjct 6644 GCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGCACCCCGAGGCCCATG 6703 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || ||| || | |||||| ||||||||||| ||||| |||||| |||||| |||||||| Sbjct 6704 TCGCCC-GAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCACACGTAGAACTGACA 6762 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 || || || ||| || || || || || ||| Sbjct 6763 CAGGGCGTGGCAGGGGGGCAGCGCCATGAGG 6793 Score = 109 bits (120), Expect = 4e-19 Identities = 134/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| ||||||||| || || || | |||||||||||| |||||||| || || ||||| Sbjct 7264 CATGTTCGTGTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTC 7323 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || || | || || || |||| ||||| | || || ||||| || Sbjct 7324 GCCCTCCTCTCTCTCGGAGAACCCGAGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTC 7383 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 ||| ||||| ||||| ||||| |||||||| |||| || || || || |||| |||| Sbjct 7384 CCAAATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTCGTCGATCC-CTGAGACACCA 7442 Query 25953 CA 25954 || Sbjct 7443 CA 7444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340067305994361