Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3685 145 1e-29 seq1768 125 1e-23 >seq3685 Length=125217 Score = 145 bits (160), Expect = 1e-29 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||| | ||||||||| || || || ||| | | || | |||||||| || || Sbjct 19171 CCCCTGGACGTTGCTGCACACCAGCCTCTGCAGGGAGGCGGTGTTGACGATGTTGAAGCC 19230 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 |||| || ||||||||||| || |||||||| |||||||||||||| ||| |||| Sbjct 19231 CACGCTGCCTCCGAAGGTGCTCGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCCAT 19290 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 | ||| |||||||| || || ||||||| ||| | || |||| |||||||| |||| Sbjct 19291 TAAGCCCTTGAGGGAGAAAGGGGCCCCCATCTCCACCATAGTCTCCCCGAAGATTGCGTC 19350 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 | | |||||| |||||||| | || | ||| | ||||||||| || | || |||||| Sbjct 19351 TGTCCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACAGCGTCAACGTGTCCGTA 19410 Score = 127 bits (140), Expect = 3e-24 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || | |||||| || || |||||| ||| || || || | ||||| Sbjct 21039 ATGAGCCGTGAGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGAACCTCCTTCAGC 21098 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| |||||||||||||||||||| |||||||| || ||||||||||| || || || Sbjct 21099 ACATCACACACTCTGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGCCCGGGG 21158 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | ||||| || | |||||| Sbjct 21159 ACCAGGCCGAAGGCCTCGTGGCCCACAGCAAAGCGGTGAGAGTCGGGAACGTGGGGAGGG 21218 Query 9802 TAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAA 9859 ||| ||| | || ||| || |||||||| | || || |||| || || || | | Sbjct 21219 TAGTGCATTTCGGCGCCT--ACCTCTTTGACTGTTGGTGGGTACACCTCTCCATCCAGGA 21276 Query 9860 TCT 9862 ||| Sbjct 21277 TCT 21279 Score = 86.0 bits (94), Expect = 9e-12 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| |||||||| || ||||| |||||||| || || || | | |||||||| || Sbjct 20247 CTTACCCGGCCAGCGATCTGTTTGGTGAACGACTCCACGAGGTTGCCGATGCCGTGC-TC 20305 Query 9382 ATGAG-TATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTC 9440 || || ||| ||||| | ||||| | ||||| || | | | ||||| | Sbjct 20306 GGGAACTAGGGAGGTGTTGAAGACGAATTCTTTGTAGCTGTAATCCTTCTCCTCAATGTG 20365 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || || ||||| || | |||||||| ||||| |||| ||||| || || || Sbjct 20366 GAAGCTGTCAGGCATCAGCGGGTGCCAGTGGTACAAGGTGTTGAACTCTGATGCAATGCG 20425 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || ||||||||||| || | ||| ||||| ||||| | |||| | || |||| Sbjct 20426 GTTCTGGTACTGGAAGCGCTGGTTGAAA-AGCAGCTCGGGATCAAACTTGAGCTTGAAGT 20484 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 20485 TATAGCCGCTCAGGTGCTGCACGTA 20509 >seq1768 Length=121181 Score = 125 bits (138), Expect = 1e-23 Identities = 195/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 8662 CTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAG 8721 |||||| |||||| ||||| | | | ||||||| ||| |||| || ||||| Sbjct 55228 CTCCTTGCGGGGAACACGGAAGTCCACGTATGGACACCACTTGGTGTTGAGGCACACTAG 55287 Query 8722 AGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGG 8781 || | ||| | | | ||||| || || || ||||| |||||||||||||| Sbjct 55288 TTTCTTCAGAGTGGAAGTTTTGACAATATTGAAGCCGGTCTCTCCCCCGAAGGTGCTGGG 55347 Query 8782 TTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGC 8841 |||||||| | |||||||| ||| ||| |||| |||||||| || || || ||||| Sbjct 55348 CTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCATCAGGCCTTTTAGCGAGAAGGGAGC 55407 Query 8842 CCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA 8901 |||| ||| | || ||||| || || | ||| || || | || |||| || || Sbjct 55408 GCCCATCTCCACCATACTCTCGCCAAATAGATTGTTAGGGCGCGTTTTCTCCAGCAGGAT 55467 Query 8902 TCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | ||| ||||||| ||| || ||||||||||| || Sbjct 55468 GCCAGGGTAGAACTCCAGAGCATCTATGTCTCCGTAGAG 55506 Score = 105 bits (116), Expect = 9e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || |||||||| | |||||||| || || || || || ||| |||||| Sbjct 57054 TCACCAATGATGATGAGCCTGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 57113 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| | || || |||||||| || |||| ||||| || || |||||||| Sbjct 57114 TCTGCCTTCAGGATCTCACAGACTCTGTTATGCTCCCGCAGCCATATGGTGGCGTACATG 57173 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||| || |||| |||||||| |||| || |||| |||| ||| | | | || Sbjct 57174 GTGAGGCCCGGCAGGAGGCCAAACACCTCATGGCCGATGACCAGGCGCTTCTCTGGAGGT 57233 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCT 9825 || | ||| |||||||||||||| |||| ||| Sbjct 57234 ACGTTTTCAGGGTAGATCATGTGCACGGGGACCTCT 57269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708374619312080