Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3008 387 2e-102 seq2247 111 2e-19 seq594 96.9 4e-15 >seq3008 Length=76608 Score = 387 bits (428), Expect = 2e-102 Identities = 1057/1609 (66%), Gaps = 11/1609 (1%) Strand=Plus/Plus Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 || || || || |||||||| | || |||| || | ||| |||||||||| | | || Sbjct 40306 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTC 40365 Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723 || || ||||| |||| || || || ||| | ||| || || ||||| || || Sbjct 40366 AGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAG 40425 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| || || || || || || | || | | | || || |||| || || || | Sbjct 40426 CCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACC 40485 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||| | || || || || || || || | ||| |||| ||||||||| ||| | Sbjct 40486 GGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCT 40545 Query 62844 TTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAAGGCAACAGAT 62900 ||||| ||| ||||| || || | | || ||||||| | || || || Sbjct 40546 GCGAGTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCGAG 40605 Query 62901 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 ||||| || || ||||| ||||| | | || | |||| | || || ||||| | Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTG--TATTCGACGATTTCCGTGCAGA 40663 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 | || || ||||||| || || | ||| || || || ||||| |||| || || || | Sbjct 40664 GGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTT 40723 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 63077 | || || ||| |||| || || ||||| |||| || || || || || | ||| | | Sbjct 40724 TGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCT 40783 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137 || | | ||| | | ||| |||| || | ||||| || || | | Sbjct 40784 GCTGG-GACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTT 40842 Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || ||||| | ||||| || || || || | |||||||| | ||| Sbjct 40843 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGAC 40902 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63256 || || || || ||| || ||||| || || || || ||||| | || || ||| Sbjct 40903 CAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA 40962 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 40963 -AGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAA 41021 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| | ||||| || |||| ||| ||||| | | | || || | ||||| || || Sbjct 41022 CACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCC 41081 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||| | || ||||| || ||||| || | ||| || | | ||||| || Sbjct 41082 CTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGA 41141 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | || ||||| |||| ||| ||||| || | | || || || | | | || Sbjct 41142 GTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCC 41201 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || ||||| || ||| ||||| | ||||| | || || ||||| ||||| ||||| Sbjct 41202 GATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTC 41261 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 ||||| || || ||||| || || || ||||| |||| || | | | || || Sbjct 41262 GATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCC 41321 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 ||| || || | ||| || || ||||| || ||||| | || || || || |||||||| Sbjct 41322 CGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACGT 41381 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||| || || | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 41382 CTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTG 41441 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | || | | ||| ||| || ||||||| ||||||| |||| || || Sbjct 41442 CTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTT 41501 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || || || ||||||| || || ||||| ||| |||| || |||||||||| || Sbjct 41502 GAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTC 41561 Query 63857 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATT 63916 || | | | ||| | | | ||| | || || || || || || | || Sbjct 41562 TTTGTTGTCTTGAACAAGCTTGAGCGTGTTCTCGGAGATCATGGGGGAGTGGCGTCTGTT 41621 Query 63917 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63976 || || || |||||| | | ||||||||||| || || || | || || || || Sbjct 41622 CAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTC 41681 Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64036 ||||| | || || ||||| || | || || || ||||| || || || |||| || Sbjct 41682 TTTGTGCAAGTTGGAGACGGCGATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGT 41741 Query 64037 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 || ||||| || || || || || || ||||| | || ||||| || || || | Sbjct 41742 CGTGAGGGTGGCGGCGATCTCCGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCT 41801 Query 64097 ATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAA 64156 || | || || || |||||||| | || | ||||| | | || | ||| | Sbjct 41802 GTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAG 41861 Query 64157 GCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGACA 64205 || || || | || || || |||||||| || |||||||||||| Sbjct 41862 TCCGTAGCACAGCTTCTGGATGCGCGACGTGATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||| | ||||||||||| || ||||| ||||||||||| || || || ||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 33446 C 33446 | Sbjct 52824 C 52824 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 62063 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62122 ||| || || || ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 62123 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62182 | || || || || |||||| |||| || | ||||| ||||| || | || ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 62183 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 62218 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| || ||||| || || ||||| || |||||||| | || || || | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 || || || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || |||||| | || | || || || |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| || || ||||| ||||| | || | || |||||||||| ||| Sbjct 30266 CTCCACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCT 30325 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || ||||| || || || ||||| || | || | ||| | | | ||| || ||||| Sbjct 30326 CTGCTCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCA 30385 Query 63332 CGGTTCCAAGTATATGGC 63349 |||||||||||| | ||| Sbjct 30386 CGGTTCCAAGTACACGGC 30403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622815158554120