Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq562 100 3e-16 >seq562 Length=198046 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | ||||| || | |||||| | || | || | Sbjct 189587 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 189528 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || ||||| || || ||||| || || || ||| Sbjct 189527 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGAT 189468 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | |||||| || || ||||||| | | | || |||||| Sbjct 189467 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 189408 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| || ||||||| || ||| | || || ||||| Sbjct 189407 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 189358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | ||||| || | |||||| | || | || | Sbjct 185973 AACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 185914 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||||||| | || || ||||| || || ||||| || || || ||| Sbjct 185913 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGAT 185854 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | |||||| || || ||||||| | | | || |||||| Sbjct 185853 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 185794 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || ||||||| || ||| | || || ||||| Sbjct 185793 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 185744 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| | || | || | | | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 189068 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189009 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||| || || ||||||| | | | || |||||| ||| Sbjct 189008 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188949 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || ||||||| || ||| | || || ||||| Sbjct 188948 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 188902 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| | || | || | | | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 189296 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189237 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||| || || ||||||| | | | || |||||| ||| Sbjct 189236 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189177 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || ||||||| || ||| | || || ||||| Sbjct 189176 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 189130 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| | || | || | | | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 185682 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 185623 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| | | | || |||||| ||| Sbjct 185622 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 185563 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || ||||||| || ||| | || || ||||| Sbjct 185562 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 185516 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | ||||| | || | || | | | Sbjct 188672 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188613 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 188612 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188553 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||| || || ||||||| | | | || |||||| ||| Sbjct 188552 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188493 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || ||||||| || ||| | || || ||||| Sbjct 188492 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 188446 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | ||||| | || | || | | | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 188840 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188781 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||| || || ||||||| | | | || |||||| ||| Sbjct 188780 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188721 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || ||||||| || ||| | || || ||||| Sbjct 188720 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 188674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478560941521040